AMCG00009617


Basic Information

Item Value
gene id AMCG00009617
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42707757 ~ 42722609 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009617
ATGAATGGCTCTGCCTTTGGGCAGGAGAGACGCGCCAAGGTCGGAACAAGGAGCAGCAACGCGCAGAATCAGCTGCTTCAGCTGGACATCAGCCCAGTCTCTGCACAGAACAAGGGCAGCAGATGTAGAAGGACCGCGGGAGACATCCAGTACTCCTTCCAGAGCTGTGATACTCTATCCCCCTGCAGAGCAGAAGGCGGGACTACTGAGGAGTGTGAGGTGGCTATTGGTCAGCCTGAGAGCCTCCAGGTGACGAGTGTGACCGATGGCCGCTGCCCGGGCTCCGAGGCTGTGGTCCTGGCATGGACACCCAGCCGGTATGGCATGGCATTCCTCCGGGGCTTCCATGTGCGTCTGCACTCTGAAGACGGGAGTGAAGTTAAATGTAAGAGACTGGCCATCAACAGAACCAGGCAGCTGGATGCCTCTGACGCTGACATTGAGTTTCGAGCTTCATTCTGTGTCAGTTTCAGCACCTTGTACTTCATCCAGGTTTACGCCTACCCCTTCCTCCACATCAAGACTGACGAGTTCCGCAGAGCTACAACTACACACAGGTCCCGGGATTGCATGAATTTTGAAGGATACGCTAAGGAGTCCTGCATCAAAAAATGGGTTCCGTCCAACATCACCATCTCAGGTGTTGGCACCTCAGTCCGTATCAGCTTTAACACGGCCCCCAACAGCTACAGCATCCCCTCCTACTCTGTGTTCTATGCCAGGCAGCACACAGCGAATTGGAGCTATGTGACACTGCAACACAAGTCAGCAAGACATGGATATGTGGAGACAACTCTGCAGGATCTCACGCCAGGAGCTAACTATACCATACAGATCTTCTCTGATCTTCTAGATTCCACTCGAAAGCAGATAGTTTACTACCTGAAAGAGACAGAGGCGTCTCCCATTTACGTCGCAGTGACGGCCACAGCTCTGATACTGGTCACCGTGGCCGTGATCCTTTCACTCTTCCTACACAAGTGCctcaggagaagaaaaaacgGAATATCCAAATCTGACCTCGCCGGGACCCTCATGCTCCCACCTTCTGTACCCCCCCAGAGCTGTCCCCGGAGGCCCCCGCCCAGCATATTTCTCTGCTACTCCAGCTGCGAAGGTCCCGGGCACATCAGACTGGTGCTGGCCCTGGCATCCTACCTGCAGCAGCACTGCGCCTGCCAGGTGACCCTCGACCTATGGGAAGAGGAGGTGATGGCCAGGGAAGGTCACATGACATGGCTGAGCGAGCAGATCGGCCGGTGCCGGTTTGTGATGGTGCTGTGCTCAGAGAGCCTGAAGCGGCTGGTGGAcctgccctcctcctcctcctcctcctcctcctcctcttctccagATGACTGTAGAGGAAGGCATCTTTTCATGGCTGCTGCCGCCCTGGCCGGAGAGCAGCTGCTGAGAGCCCAGCTGAGCTCAGGGGACCTGTCCAAATTCATCACCGTGAGTTTCAGCCAGGGAGTTGAGGGTGGCGAGGAGAGGAGCCACGTTCCCCGGGTGCTGGAGTTGGCCACCCACTACCAGCTCATGGAGGATTTCCCCCAGCTCTTCTCTCACCTTCACTTCCTCCCGCTGGAGCAGCCCGGGGTCCGTCTCCGAGTCAGCAACATAAACAAGGATGATTACTTTTGCGTCGGTGTTCAACACCAGTGGAGGACGGTTCGCAAGGAATgctggTATCCCCAGTTTGTGAATCTGTCGTTGGAGGGCCAAAGGGTGAAGATCTCTTTCACTTTGGCACCCGTGGAACTGGGAATCCAGAAGTACATTGTTTATCACGGAGAACAGAAAAATGGACACCAAAATCCTCAGGACATCCAGTCCACTGTAGTGGCGGTCAATGCGTCCGGAGGGGCAGGACAAGCGGAGCTCCACAGCCTGAGGCCGGGCAGAACCTACACGGTCATGGTTGCTGCTGATGTGGAGGACGCTGTAAGGAAGTCCGTCAATTTCACCTTCCCCGTGGCAGTGGAACCTGTTACCCAAGACACGTTCTCCTCTCCCTGGATTGCCGGTGGCGTGGGGCTGCTGAGCATAATCCTGCTTGTGAACACCATATTCTGTACTCTCAACTACTGCCGGAGAAAGAGGGaaTCAGTGCAAGAAGTTGTCACAGAGAAGGAAGTACAACGGGAAGCGGACCAGATGATCTGA

Function

GO:

id name namespace
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009617 True 2169 mRNA 0.56 18 42707757 42722609

Neighbor

gene id symbol gene type direction distance location
AMCG00009613 NA coding upstream 19304 42675228 ~ 42688453 (+)
AMCG00009614 araf,LOC106585138,LOC106580530 coding upstream 42326 42663394 ~ 42665431 (+)
AMCG00009607 imp4,LOC106580531 coding upstream 58478 42642193 ~ 42649279 (+)
AMCG00009611 NA coding upstream 74119 42633435 ~ 42633638 (+)
AMCG00009609 NA coding upstream 75643 42629421 ~ 42632114 (+)
AMCG00009618 ccd22,LOC106572219,LOC104944807 coding downstream 122527 42845136 ~ 42856980 (+)
AMCG00009620 NA coding downstream 139794 42862403 ~ 42862624 (+)
AMCG00009619 NA coding downstream 140087 42862696 ~ 42886719 (+)
AMCG00009625 NA coding downstream 164499 42887108 ~ 42888491 (+)
AMCG00009627 nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043 coding downstream 169089 42891698 ~ 42913492 (+)
G58008 NA non-coding upstream 71304 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 229645 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 239155 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 272605 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 279709 42427842 ~ 42428048 (+)
G58123 NA non-coding downstream 215398 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 283992 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 490101 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 526794 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 587251 43309860 ~ 43311062 (+)
G57830 NA other upstream 629516 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1108633 41596229 ~ 41599124 (+)
G57604 NA other upstream 1713098 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2602705 40086474 ~ 40105052 (+)
G57430 NA other upstream 2758557 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 714381 43436990 ~ 43444420 (+)
G58324 NA other downstream 1210343 43932952 ~ 43935762 (+)
G58522 NA other downstream 1663888 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1839168 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1861953 44584562 ~ 44603609 (+)

Expression


Co-expression Network