AMCG00009618 (ccd22,LOC106572219,LOC104944807)


Basic Information

Item Value
gene id AMCG00009618
gene name ccd22,LOC106572219,LOC104944807
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42845136 ~ 42856980 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009618
ATgactaaatatattaaaatcccAGAGGACTTAGAATTGTACCTCTTGTGGCTGTTGGAGCAGGTGTTCTTCTGTGGCTTTGCACTCGGGGTTCAGTGTTTGAAGCACTACAACTCCCAGCGTGCCACGGTCCACACGCGTTTCCGGTCATGCGACTGCGGTGAACGGTGCATGCCGGGAATAGATGTTCTTCTGACGGTCCCGTTGACGACGGAGACGCAGGATGAAACTACAACTCCCAGCGGCCAGCGCGAATCGCAGCTCCTGGCGCATGACTTCCTGCTTCCCTTGGAGCTGCTGTTGAAAGTGTACAAATCGAAAGGGCAGCCTTCCAGATCAGGAGAAAAACACCCCGCGCACAGCAGGGCCATGGAGGAAGTGGACAAGATCTTAATTCATTCCCTCAGACAGGCGGGCACTGAGGTGGGTGAGGACGTGCAGTGTGTGAAGCAGTTCTCCAGCGAGCTGATCGTGGAGGCCGTGGTGCGATGTGTGCGTATCATCCAACCGTCCCTTGGCAGCGGCCTCAGCCACCTCCTGCCCCCAGGCATGTCCGCCCGCTTTCGCCTGGGCATGAGCCTCGCCCAGGCCTGCCAGGATCTGGGCTACAAGGGAGAGATCGGCTACCAGACCTTCCTGTACAGCAACGAGCCGGAGATCCGCTCTCTGCTCATGTTCCTGGTGGAGAAACTGCCGCGTGAGAGTGCCGAGTCTTCAGACCAGCCGGCAggCAAATCCGCCCTCCTGCAGAGAGCGATCGCTGCCCAGATCAAAGCCCAGCTGGCTCTGCCTTGGGTGCCGCCCTCCTGCCGAGTGCCCCTCCTCTGCCAAACCCAGGGTGCCACACCGGCTCACAGTTTCCACGCCCAGCCTCTAAGCTTACCGCTGAGTTCCCGACACCCCGGCAAGAAAACTCCAAAAGAGGTGAAAGAGTACTACCGGGAGTACCTGACCCCTGTGACCGCCCAGGTCTCCCAGCACGCCTCGGTGCTGGCCTCCCTGCTGGAGCGCAACGTGGCAGAGCTCAGCACCACTCAGGAGTGGGAGAGCGAGTGGAACAGCCAGGGCCTAGTGTCCCGACTCACGCCCGAGgaGTACAAGTCCCGGAAACGGCAGCGTCTGCAGAAGCGCATCCAGGACCAGCTGCGCCACGCTGCCCAGCCACGCCCCGATGCCCAGCACGTCCCACGCTCCGGCTCCGACCTGGCTGAGCTGCTGAGGACGATCGGCGGAGGAGCCGAGGGGCGGAACGTCCTGGCCAAGGGCACGCGATTCACCCACACCGAGAAGTTTACCTTCACACAGGAGCCGGAGAAGGCGGTGCAGCAGATGGCGGCGGCGGCCGAGACCCTGCCCAGCTCCCGGCAGTCGGAACAGGACCTGCAGCAGCGGCAGGAAGAGGAAGTGACCTCGCTGAGGGGGCAGCTGGAGCAGCTGTCTCTGCGCATCGAGGAAGTGGGCTCCGACATGAAGCAGCTCACCGTGTCCATCGGTCAGGTGTCTGATGAACTGAATCAGAGGGAGCTGAGCAACGTGGAGAAGGAGGGGTCTGTGAGGGTGAAGAAACAGACCATCGACCTCCTCCCCGACGCCGAGAACAACCTGAGCAAACTGCAGGTGCTGGTGGAGGGCAGTGCCAAGCGCGTGGTCAGCCTGGCGGCGCAGTGGGAGAAGCACCGCGCCCCCCTGATCGAGGAGCACCGGCAGCTGAAGCAGCTCTGCAGCAGCCGAGAGCTCGAGTCGTCCAGAAGGCTATCCGAGATCAAGGGCCTCCATGACAAGATTCGGCAGTCGGCAGAAGAAGCCAAGAAGAAGGAGGGCCTGTACAAGCAGCTGATGACGGAGTTCGAGAGTCTGCCCAAAGACGTGTCTCGCTCAGCCTACACCCAGCGCATCCTGGAGATCGTGGGCAACATCAAGAAGCAGAAGGAAGAGATCACCAAGATCTTGTCCGACACCAAGGACCTGCAGAAGGAGATCAACAGCCTGACCGGGAAGCTGGACCGCACGTTCGCCGTCACCGACGAGCTGGTGTTCAAGgacGCCAAGAAGGACGAGTCCGTGCGCAAAGCCTATAAGTACCTGGCGGCCTTGCACGAGAACTGCACCCAGCTGATCCAGACCATCGAAGACACGGGGACCATCATGAGAGAGATCAGGGACCTGGAGGAGCAGATCGACACGGAGGACGGAAAGAAGACCACGAGCAACCTGGAGAAGATCCTGGAGGACTACAAGGCCATCCGGCAGGAGAACGCCGCACTGGCCGCTAAGATCCGAGAGGCCTGAGAGACACCCGGCCCGTTccgccccccccaccgcccccaCAGAGCATCTCTGCCCCCTGCCggtcccctctctcccccccgcGCCGTCCGATTggggggggtggcggggggcGGAGTTTGGGGGGGTTCGGGGGTCAGATATTCCATCTCCAGATTGGCTCGCCTGCCACCACCCTTGTCTTGGCATCATTCATCGCTTCACCTCGACTTCCTGTTTGCTCGCCTTCAAGACCGCGGGAGACGAGGAGACGGACCAGGACGGGCGAGTCAGATCTCTCCTGCGCTGACGCGGACGCATCGATGGACTTTTATACTCTATATGTGCCGTGTGgggtttaaataataataataatgaatgaacaCAGTGGTGAATATTGCCAACGGTATAAATATCTGTTTCTACTTCATCTGGCTGGATTGGAGAGACGGACCTTGCATGGCCTTCTGACTTGTCCAAGGGCGGTTCTTAATTTTTAATCATCGCtatattagtagtattattattattagtcatatTCTTGATGAGGAATCTCTGTACGAAAGTCTTGGTTAGTCCCCCCCGCCTACTTTTAATCGCCTGATATTTTTTGGTAAATTGACTTCTAATCGACAGGGTTTAATCGCGCATTAAATATGTTCCAATAGTGAATGGGTGGGGAGAAACTAAAAGCAGAAGAATGTGTGTAGCTGAACTCCCACTTGTCGCCGCCATGTTTGTGGTCAGTCTTGGCAGCGTCGGAGTGAGGGATCGATTTTTGTAGCAGCTGCCTGGGGGGAGAACTGGAGGCGGGAGTGGCGGCGGCTCTACGGATCACATGTCCGCGTCTGATCTGTAAAGCGGGACCGGTTTGTGTCTAATTACCGCGTTGTCTCGCTCCTTCTCTGTGCgttttaagtgtcttttggtTTCGGATCACATGCAGCCTTATTGCAGTTGGCTCACACGTTGTCTTTTGTCATATCACCCCCCCGATTTTAGCGCAGCGGTGTCGGGACAGCTGCGCCACGTTCTCTAGAGAACAAGCCTTGAGCTAGCCTGCCCAGCTGCCCATTCGCCCAGTTCATCTCCTTCCTTCCCAACTATAACAACGTTCAGGAATTTCCCACTTTCCCTCGGCTGAAGTTCAGGGTGCGTTTCACTTCTGGCCTTCACATCCGCAGCAGCGGTCACACAGTGGATGGAGACTTGAACCGACTACTCGAATTCATCAAAATGAACCGAAACCAGGAAAGTGTGGCTCTGATTCGAAGACCCACCTCTCGGTCGGAGTTCTCTCCATtttccagcagagggcagtgtgaaCACGGCCCCCCCAATGCAGCCCCGACAAACTGAACCCCGTGTGTGCGATCGCCTTGCAGTTGATACGACCCTAATTAACCCACCCGAAGTAGCTCTCCATGATAAACTAGTGTGTTAACCACGACCACCGCTGCTCGGTGTTTAGGTTACGAGTTAATCTTTCATTGTGCCGTACCTGCCGCACtgaattgatttgattgattgaaactGTCTTCTTCACGTGCCTATAAATTGGTAAAGATCATGTTAAACCTGCCTAGGTTAGCCGATGATGCCCTGAATGACTctgatgcagatttttttttaaggaagacCCCGGGTTTAGACGCCTGCAGGGGGCCTCAGCGCTCAGTGCAGGAGGTCGGACACTCCGGGACCCCCTTGTCACTGTCTGCACTCTTCTGTGAGTTGGGTTTGTTGGTGTTGGACACAGAGTATGAGAATCCTTTGCCAAGAACACTTTCTTTTCCCTCTCAGATTTTGTAGAAATGGTTTCAGTAGCAttaaccaccccccacccccctccctccaaCACAATTATCCGCCATTGTTGTTACTTTGGGCGGCTCTTGTCATTTTCATCTTATTTGAGATCGTTTGCTGGTTTCCGAGCAAAACCCA

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 22-like

GO: NA

KEGG:

id description
K23343 CCDC22; coiled-coil domain-containing protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009618 True 4212 mRNA 0.56 18 42845136 42856980

Neighbor

gene id symbol gene type direction distance location
AMCG00009617 NA coding upstream 122527 42707757 ~ 42722609 (+)
AMCG00009613 NA coding upstream 156683 42675228 ~ 42688453 (+)
AMCG00009614 araf,LOC106585138,LOC106580530 coding upstream 179705 42663394 ~ 42665431 (+)
AMCG00009607 imp4,LOC106580531 coding upstream 195857 42642193 ~ 42649279 (+)
AMCG00009611 NA coding upstream 211498 42633435 ~ 42633638 (+)
AMCG00009620 NA coding downstream 5423 42862403 ~ 42862624 (+)
AMCG00009619 NA coding downstream 5716 42862696 ~ 42886719 (+)
AMCG00009625 NA coding downstream 30128 42887108 ~ 42888491 (+)
AMCG00009627 nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043 coding downstream 34718 42891698 ~ 42913492 (+)
AMCG00009628 NA coding downstream 57800 42914780 ~ 42927057 (+)
G58008 NA non-coding upstream 208683 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 367024 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 376534 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 409984 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 417088 42427842 ~ 42428048 (+)
G58123 NA non-coding downstream 81027 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 149621 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 355730 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 392423 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 452880 43309860 ~ 43311062 (+)
G57830 NA other upstream 766895 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1246012 41596229 ~ 41599124 (+)
G57604 NA other upstream 1850477 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2740084 40086474 ~ 40105052 (+)
G57430 NA other upstream 2895936 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 580010 43436990 ~ 43444420 (+)
G58324 NA other downstream 1075972 43932952 ~ 43935762 (+)
G58522 NA other downstream 1529517 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1704797 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1727582 44584562 ~ 44603609 (+)

Expression


Co-expression Network