AMCG00009622


Basic Information

Item Value
gene id AMCG00009622
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42791295 ~ 42797463 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009622
ATGTCGGACTGCAAGAAGCGCTCGACCGCGGCCAAGCGCGGCGCGTCCCCGCCGCCAGGGGGCTCGTCCCCGCCGGCCAAGCAGCCCCGGGAGCGCGCCGAGGAGCGGGGCGCCGGGGACGCGCCGCGCGAAACCCTCCGCAGCAATGGAGGCGCCGGGGACGCGCACGCCTGTGGCAGCGGCGGCCACGCTGTCGGGGACGCGCCCCCGGAGAAGGCGGCCGGCGGGGGCGCGCGTGTGAAGGAGCCCTCTGATTGGGCGGCGATGGCGGCGGCGGAGGCGCTGGCCAGCCTGACGCGGGGAGACGGCGGGGGCGGCGAGGCCAAGGCCAAGGCCCGCAAACACGTGGAGGCCAAGAGGAAGAAGACCACCGCGGGCAaacccagcagcaggagggCCTCTCCCAGGGCGGGGGAGGCTGAAGACAGCCCCACGACAGAGAAGGGCCTGGGGAAGGGGGAGACGACCGCCCCGGCTGACAGCTCCACCTCTGATGCCGCAGCTGCCGTCGTGGACGCGGGGGGCACCGAGGTGGCAGTCGGTGCTGAGGAAGATGAAGAccatgaagaggaggaggaggacgagggaGATGGGGATTCTCTGTCCGGTCTGTCCACCCAGTCCTCGTCCTCCGAGGGGCCCGGGGAGCCGGAGGACACGGAGTGCTCCATCGTGTCGGTCAAGGTGGCCCCCGAGACCCGGCAGTCGGTGGCCCGGCTGGCCCAGGTGCAGGTGGAGCTGGAGGCCATCGAGAAGCGGGCCACGCGCAAGTACCGGCGCATGGAGCTGCGCTTCAGTGAGATGCGGAAACCCCACCTGGACCAGAGAGGGACCATCATCCAGAGCATCCCTGGCTTCTGGGTCACGGCTTTCCTGAACCACCCCCAGCTCTCGGCACACATCGACGAGAACGACGAGGACGCGCTGAGCTACATGACCAACCTGGAGGTGGACGGCTTCAAAGGCAACAAGATGGGCTACCGGATCTGCTTCCACTTCAGCAGAAACCCTTACTTCCAGAATAACATCATCGTCAAGGAGTTCCACATCGGGATGGCAGGCTCCTCGGTGTCGTTCTCGAACCCCATCTTCTGGCACCGGGGCAGGAACCTGGCTGCCCACGGGAAGATGGTGAAGGGCCCGGGCAGCATGAGGGTCTACCAGAGCTTCTTCAACTGGTTCACCGACCACAGCAGCCCCAGCACGGACGAGATCGCAGAGATCCTGAAGGACGATCTGTGGAAGAACCCTCTGAGATACTACCTGACGCCAGTGTGGGAGCCCAGAGAGAACGGGAGGCGCGCCGACAACGGCAACGGAGACGAGTGTGTGGTGATCTCGGActcggaggaggagggggaggaggaagaagaagaagaggagatgGAGGAAGAGGATGACGACTACGACGACGTGGGGGCGGCCGGGGACGAATCCAGAGAGGAAGACCTCAGCGAAGAAGgcgATAGCTCGGATGGGGACGCCACTGCGGACAGGGAGGTCGTCATCGATGGCTCCGAGGACAGCGAGGAGGGCGTCCacgcggaggaggaggaggacgactCCTCTGACAGAGACGGGAATGACGAGGACCTCGACGTGGAGGAACTGGACGACGGCGAGGGCGGCGGGGCTCCGGGGGCCAAGGGGCAAGAGGGGGGCGATGAGGAGGACATCGAGGTGGACGGGGAGGAAGACGGATAGGGACGCCCCTCGCAGGATcctttccatatttatttttatttttttatttattttgtactttcttCGGCTTTTCTAAATCGCGGGGCCCGGCGCCGGTTGAGCGGTGTCCTGACCAGCCGGGGAAAGTGGCAAAGTAGTGCTGCTCTCGGCAGACGTGTGGGGAACCGGACTCGCCCTGGCCGGCCGTGGGGCGCCGAGGGCTCGGACCCGCCCTGCCGGGAAGGGGTGGCTGCTCGGTTCTCCCTCTGGCCCCACAGACCCAGCAAAGCAGATTTTAAAGGCCTGACGGTGTGTTGTCCTGAGGGGCCGTGCTCGGGGCTGTGCTGCTTTGGCGAGTGATTTGCATCGCAGGGCGCGGATTTGAATATTAATCATTTGCATCCTCTGTCATGAGATGCGCATTGTGGGCTGCGTTTGCAGGGAGGCGTCCATTAAGATGGTAATGCGGCGGGGGTGACGACTGGCATCTTAACTGACGGTCTTCAGCTTCGCCATGGCTTTGTCGGATCTGAAGTCTAAATATTAGCAAAACTATTGGTACCCCAGACGTCTTAAGAGAGTGCAGTGTAGGTCCTGACCACGGGCTGGACAGCATGCATCCCGTTTGTCCCGGGAGAAGCACTGCGACGTTCCTCTGCGAGGTGCCGCTTCGAGCCCCCCAAAAAGTTGATCTCGGCCCGTGTATGCCCATTCCCCCGCTCCAAGTCATCCCGGAGGTGTTCTGCATTAGACTGAGGTGGAGAAACGGCTATCTGCACCGTCCTTTCCTAGGTTTCTCCCCGTGCAAGTCCACCGACCGTTGGCAGGACCAGCCGGCGTCCAGAGACCCAGTGCGTGTATTCGCTCACCGGTGCCGCTTCAGAGACCCTGTAGGGAAGGCGACCCCTCCGGCAGCGTCTCTCTCTGAAGCACCTAAGAGCCCAAAGTGATCGGACGGTCGTCTCTCGTCCGGGGAACGGGGCAGTGAAGCCGTTCCCACAGCGGCTCTCGAACGCAGGGGAGACGCACGGcttccccccccgcccccaggTTGCGTGTGTTGCCGCTGGCCTCTGTCAGTGGCCCGGTTTGCCAGATTTATGCCCCTCTCTCTTGCGCGTGTCTTTATCTTGATGAGCGATCCTTTACTCATAATAGGCTGTATATTACTTTCCGAGTCTCAGGGATgaaacttgtatttaaaaaaggaaaaaagtgttaaGTAAAAGATTAAAACCGACCTAGATCATGAAGTTGTGCTGCCTGTGAATTTTGCTACGATCATGATTTATTGTGGTCCTTGGGTCAATGACAAGCTGACTAATAACTTAAAATGTGCCCATACTGTCTACGACGCTTGAAGAGGGGTTTGTGATGAGAAAAATGCTATTTGCCTAGGAGTTTGATGGGTCGACAGTATTACCAGACTAAATCCCCCTGTCCTGCTTCGAAGGTCAGGCGCCGCCTCCCCCGCCGCCACTCTTAAGATGACCCTTCGGGGCCGCGGCGTGGGGCAGGTTGGGATCGTGGTGTCCAAAGCTCTGTGTAAGTGGTCTTTGTGGATCTTGCTGTCGTCCCCGACCCGTTTCCGCACGCATCTACGAGGCTCTGTCTACCGTCGTGTTGTGAAGTACTATCCACCActtcttttgtatttctttttccgGGGGGTTGATGCAAGTCTGTGAGGAGAAACTTCTGCCTCCAGAGCCCACTACAGCTTTCTCAATACTGCAGTATACTGCGTCTCTGCTCCATTTGTCAGCAAAAGACAAATATATCAACTCCCGTGTGTTATCAggctaatttatttttgtatgtaatgaACTTACTGTAATGAAGCTGCAGTTATGcttttcagtctgttttttatgatttttattttatagtttttaccTTCACCATGATGTTCATATTTCTTCAGTCGGCTCTTGAAATGCAGCTTCGTGTGTCCGTCTTTCCGGGCGGTTTGTCCTCCCCTCGGATGAGATGTCCTCAGTGCTCGCATCCGTCTCCCTCgcctctctgctctctgttttgtgtttgggaATATTCATCGGGAGATCGGCATCCCGTTTCAGCAGACGGACTTCAGACGTCTCTGGGAGCGTGCGAGGGACACATCCTTCGAGACGCGCCTGTAGGCAGACTCGGTACAAACGGGATCGGCTGGCCAGGTTCTATATAGGGAGCAGTGAACCCACGTGGACAGAGTCAGGACCTTTATgggttttgtatttaaaaacgtaatattttaaaatgcactagggatttctttgcaaaatcCTTCAAAACTAAGAATTTGACACTTAAAGAAGCCTTAAAGAAATATATGCCAGATATATGTTTGAGGTTAGACTGTTGTAGATTTTTCTAACATCACTCAAATGACTACctgacaaccccccccccccacacacacacacacagtacaattaaagtctgcatttttaaagatcTCTGCATTTTTAGCTATCTGTTTGCATATGCTTtgtaaatattgcttttttttttttttccccttcctcaCAGATTTGGGTAAAGCTTTGTAAACTTTACGAATGAtgagattattttgttttgagatcaaggaaattaaaaattaaaaaaagctatATTTTGTGTACTGCATTTGTTTGAACAGCTTTATATCTGCTGGATTGTGATGGGAAGAGGGTTactctgttttgtttctaaataaatCTGTGCAGAGATCCAGATGGAATATGTTTAAATGGTGAATGTATCAAATCAGTTtcacctgcattacttat

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11284 TSPYL1; TSPY-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009622 True 4457 mRNA 0.56 8 42791295 42797463

Neighbor

gene id symbol gene type direction distance location
AMCG00009615 NA coding downstream 51471 42722627 ~ 42739824 (-)
AMCG00009616 NA coding downstream 88093 42690708 ~ 42703202 (-)
AMCG00009612 NA coding downstream 183647 42600098 ~ 42607648 (-)
AMCG00009602 NA coding downstream 244072 42545628 ~ 42547223 (-)
AMCG00009603 NA coding downstream 253740 42537228 ~ 42537555 (-)
AMCG00009621 NA coding upstream 1582 42799045 ~ 42811220 (-)
AMCG00009624 NA coding upstream 15581 42813044 ~ 42836293 (-)
AMCG00009623 NA coding upstream 60340 42857803 ~ 42863632 (-)
AMCG00009630 NA coding upstream 130113 42927576 ~ 42931214 (-)
AMCG00009629 NA coding upstream 135654 42933117 ~ 42942679 (-)
G58039 NA non-coding downstream 94162 42696897 ~ 42697133 (-)
G57998 NA non-coding downstream 251182 42539439 ~ 42540113 (-)
G57988 NA non-coding downstream 313183 42477721 ~ 42478112 (-)
G57982 NA non-coding downstream 322536 42468185 ~ 42468759 (-)
G57873 NA non-coding downstream 585736 42205270 ~ 42205559 (-)
G58149 NA non-coding upstream 209138 43006601 ~ 43010113 (-)
G58246 NA non-coding upstream 589720 43387183 ~ 43387918 (-)
G58277 NA non-coding upstream 678370 43475833 ~ 43476088 (-)
G58336 NA non-coding upstream 733972 43531435 ~ 43568662 (-)
G58374 NA non-coding upstream 1072891 43870354 ~ 43871117 (-)
G58025 NA other downstream 117588 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 735167 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 964361 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 2633824 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3953701 38827965 ~ 38837594 (-)
G58333 NA other upstream 684958 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 1192048 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 1704324 44501787 ~ 44512249 (-)
G58584 NA other upstream 1744431 44541894 ~ 44542809 (-)
G58589 NA other upstream 1768606 44566069 ~ 44566834 (-)

Expression


Co-expression Network