AMCG00009627 (nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043)


Basic Information

Item Value
gene id AMCG00009627
gene name nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42891698 ~ 42913492 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009627
CCGACGCAGGGACGCCGCAGCCCGCCCCCTGGGCGCTGtgagtgttgttgttgtgcggCTCCGGCTCAGTCAGCCCGGGCAGAGACAGCGGCAGGTACGGAGCTCCGCACGGTCCATTTATGAGCGCTTTGGGACAAGACGCAGTTTAGCGCTTCGGTACCGAGGTTATCCTGTTGCACAGAGACACGCCAGCATGGCCTGCAGAGCGCTGGGCAGCCTGAGCCGGGCCCTGTGGCAGAGAGAGGTGCGGGGGCTCCAGCTCTGGAAAGCGGCGAGGGTCCCCGCCCTGGCGTGTGGCGGCGTCGCGCCCGGCGGCCTGGACGGGAAGAAGTGCTGCAAGAGCGGGCCTGGGGCCACCGGGGCTCcgggctcctcctcctccgccggGGCGTCGGCACCCTGCTCGACCCCCGCGCCCTCCCCGGCCCACAGGCACCAGCTGGGGGGCAAGAAGCGCGCCGAGGAGTCGGTGACCGTGTCTGGGAGATCCTACTCCTCCACCGCCCCCAAGATCGACCCCAAAACCTATCTGTGGGCCCGGTACAACGAGATGAAGCGCCTGGTGCACGACCTGATCCCCCCGGGCGTGTGTAACCTCCTGAACCCCTCCACCATCTACGCAAACAATGAGGTCAACCTGGATGAGGTGGACATCTACGGCTTCGACTACGACTATACCCTGGCCCTCTACTCCAACGCTCTGAACTCCATGATCTACGACAAGGCCCGGGACTTTCTCATCGAGCACTACAAGTACCCAGAGGGAATTCGCAAGTACGACTACATCCCCAATTTCGCCGCCCGTGGCCTCCACTACGACATCCAGAAGGGGCTGCTGATGAAAATCGATGCTTTTCATTACATCCAGCTGGGCACGGTTTACAGGGGCCTGAAGCCCGTCTCGGATGAGGAGGTGCTGCAGCTGTACGGTGGGACGCACCACGTCCCCCTGCACCAAGTCAGCGGCTTCTATGGCAAGGGTCCCAAGATGAAGCAGTTCATGGACGTCTTCTCCATCCCCGAAATGACGCTGCTGGCGGCCGCCAACGACTTCTTCATCTCGAATGACATCGAGTACGACCCCGTGCATCTCTACAAGGATGTCTCGGATGCCATCGGGATGGTGCACATCAAGGGCTACATGTACAAGTGGATCATGCAGGATCTGGAGAAGTACATCCTGCGGGGAGACGAGACCTACGCCGTCCTGCACCGCCTGGTCAGCAGCGGCAAGAAGCTCTTCCTCATCACCAACAGCCCCTTCAGCTTCGTTGACAAAGGCATGAAATACATGGTGGGCAAAGACTGGAGGGACTTCTTTGACGTGGTCATCGTGCAGGCCGACAAACCGCACTTCTTCAACGACTGCGTCAAGCCCTTCCGACGCCTGGATGGCAACGGCGATCTTCAGTGGGACAAGATCAACAGCCTGGAAAAGGGCCAGATCTACAAACAGGGCAATCTCTTCGACTTCCTGCGGCTGACCGGCTGGAGGGGGTCCAGGGTGCTCTACTTCGGAGACCACCTGTACAGCGACTTGGCCGACCTGATGCTGCGTCACGGCTGGCGGACCGGGGCCATCGTGCCGGAACTGGAGATGGAGACCAAGGTGGTGAACACAGAGCAGTACGCCCAGAGTCTGACCTGGCTGCAGGCTCTCACCGGGCTGCTGGAGCGCATGCAGATGCATCGTGATCCGGAGTCTCAGAAGGTCCTCCAGGACTGGCTGAAGGAACGAGAGGAGCTGAGggcCGTCACCAAGAACCTCTTCAACCCCCAGTTCGGGAGCATCTTCCGCACCTGCCACAACCCCACCTACTTCTCCCGCCGCCTGTGCCGCTTCTCGGACCTGTACATGGCCTCCCTCAGCTGCCTGCTGAACTACGACCTCAGCTACACCTTCTACCCCCGCCGCACCCCCCTGCAGCACGAAGCCCCTCTCTGGATGGACCAGCTGTGCACGGGCTGCATGAAGACCCCCTTCCTGGAGGAAATGGCGCACATCCGCTAAAGGGAGGTGTTCGAGTGGCGCCGCCCTGCTGGACACACTGAGATGTGCCGtctgacttattttttttttattttttattttttttggataTACGGAACAAAGACGTTGATTGTGAAGGAACCCGATACGTAGGCGGAGGGAAGCCTGTTACTGAGTGGATACGTTGTGAATCCTGACTTGAATTTCTGTttgagtttgtttaattttaggtGAAATGTGAAGTGGGGAGATTTTGTAGCAAATGCCAGCGGGAATAAACTGAGCTGTCAATCGATTTCCCCGTCGGATTGGAAAGGGGCCGGCGATTTGAGACTACATCCAGATCTGCCGGGATGGACCAGGACACTCCTGGTCTCGCGGGGCGCGCGGATCGCCATTGGGTCCGAGGAAGAGGACATGGGAGCTACTTGACACGGGGGGGACCGTCCCGGTGGCCAAGGCGGGACACCCAGGATAGAGGGGAAGTAGTGACGGAAGATTGTAGCAGATTTAGAATACCGCCGCCCCTCTGGTGTCTTCTGGAACTGCGCTTGCTGCCTTTCGCAGGGGGTTCGAGAACAGACTCCTTGCCCGATGCTCCCATTGCGATCTCGGCCTCTTGAAGAGGACGtctgtttggttttctttccgACGTGGGTCTCCGCACACGGCCCAATCCCGAGCTCATGAACTCCGCGCACAGCCGGATCGTGATCAAGaactctgctgctgcttttactttcgtttttttttcttcgagtgtctatatatatatatctatcccCTGACCAGTCGGTCTCCCTCTTGGGCtgctgcaggagagggagaaatTGACTCCCTCCTAAACCCTACAGGTGGCTTTTGACAGACGAGTGTGGGTTTGGGCTTGAGGTTGAAGGACAGGAGGGAGGTCTGTAGGAGACTGGAAGATGTTTCCTGTACAGATCTAGAACTTTTTCAGGGGTAGGGggacgttttttttgtttttttttttgcctactTAGGTTGAATAGGTGCTAAACAAAACAACCGAAAACTGAAAACTTTAAACTGCTATCTTCCTTTATAGCAATCCTTTAGCGTGTATATTGTGAATGCTGGAGAAATCgacaaagaatgaaaaagctcGTGGGTGGGGGGTGCAAGAAGGGAGAGCTCGGCCAACTTCTTAAACCCCTCGACAGAACCTCACCTGACCTTCGCGGAACGTGCTGGTTGCTTgttctccctcactccctcgtTTCTGTCGCATCTGTTCTCATTCACCGCAGTGCCTTCTGCTGAGCTGACCGATCTCCTTCTCCCCACTCCCCCCCGGCCGTGTCTTCGGTCTTGAAGATCTTGGGGTCGCCGCTGTGGTGGGACCGAACCGGAAAGGTCCGGGGGCAGAAGGGGACGGGAGGGCGGCGCCGAGAGAGAACCAGAGTGGGGGGAGCCGGAGTAGAGATCCACCCGGGGGGGGGCGCTCGGTAGTCCGCTGGaacgaaaaacaaaatggaggcGTACGATGACCCCGAAGAGAGAACCTTAAATTCCATAATGCCAGTGAATAACTAGCATTGGGAACCGATCTAAAGAATATGGGATTGGATCTGAAGAAAGCTGTTCTTGGTGACTGGAAATCCGCACAATACGGCACCCATCGCCACCGGTGGACATGCCAGAACTGAACACTGCCCGCTCTTCGCACAAGAAGCAGAACTGCCTTCGTTCCAGCTGAAGAACCTTTTGGGTCTGGGACTCGATTTCGGGGGGTACAGTCGTGGTGGGATGAGGtcccctctctctatatatatgtctatctacctacctatatatgtgtatgaatataaataaatataaatggctCGTTGGCCAGAAGGAGGCCGTTATCCGCGCTCTGTAAATGTCAGTCTGCTTTGTGCATCGCCTCCCtgtgtcactgtcactgtgtaCTGTTGACCGCTAAACGCACAACATGGTCCTCCTTTTGTCACTTCAAAACCATCCCCAGCGAGGATGCGTttccttttattcattttatttgctttattattatttttttaaccccgATCACTAACGAGGGACGCGGGGGGCTTTCTTCAGCACCACAGACTCCAAGCCCGGTCCGAGCTTAGAACTAGAGAGCCTCACGGCCACTGTATGAACTGCGACAAATTACGCTGAATGTGCTATTAAGGGCTCGGTCGCATCCTGCTCGCTTCAGTCGCGGTCGGCATAAACTGGGATGGGAAGAAAGCGTGTGGGGGAGTTCCTCTTCTCCTCGTCTGTATTGAAGCCGTCGAGCCGCACAGACCCTGGCGTCGGCCGTTCCTCCGTCTCGCTGGCACTGAGCTGCGGGCCGCACTTCCTCTGCAGGCTTCCTCAAGTCCTGCTCGGGCTGTTCGAGAGGGACGTTGCATGACCGCGCGATGAATCAAATCTCAAGAGCTGTAAACGCTGCCCAGTTTGAAATCTGTAGGagctttttaaagtgtttttatttcagtggcGTGGGTTTAGGACTTAAAGGAGGGTCACcacctttattttcttttgtattttttttcctcttcaatAAGCTAATGTAAAACCCTTTTCCCCGTGGGCCTGGGATCCGAGCAGACTGGAACTGCTTCCCGGGGGGTTGTTTGGGAGGCACATGCTGCACAGGGTGGCCAGAGACGgggagttgtgtgtgtttgtggtcaCACGATTGACTTTAAGGTACATTGTTTCAATCCTCAAACCACTCTTTGATCACCATCTACAGGTtatacacttattttttaagctcattttattttaggttttatttttaggaaCACGCCTGCAAAGTTCGATTTTCAGGTAATGCCTCTCCACAGTTTTCTTGATTTGTCTTAactgttttagttttacaaGCGAGATGCAAAAGCCACTGGACTCTCCTGTGACCCAGACCGCCGCACAAGCCCCCTCCCAGCTGACCCGTCTCTCACTGTGGCTTCCCCTCTCGTGTGGGTTTGTGTTTTACATACAGAACTGTACTGTTGATTTTGCAGTTTCTTCATTCCTTTGGTAAATCTATCCGTTTACAAatgttgcaattttaaaaacaataaaaacaagtgaaaacGGTA

Function

symbol description
nt5dc2 Predicted to enable 5'-nucleotidase activity. Is expressed in several structures, including immature eye; margin; paraxial mesoderm; tail bud; and yolk syncytial layer. Orthologous to human NT5DC2 (5'-nucleotidase domain containing 2).

NR:

description
PREDICTED: 5'-nucleotidase domain-containing protein 2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009627 True 5091 mRNA 0.55 14 42891698 42913492

Neighbor

gene id symbol gene type direction distance location
AMCG00009625 NA coding upstream 3207 42887108 ~ 42888491 (+)
AMCG00009619 NA coding upstream 4979 42862696 ~ 42886719 (+)
AMCG00009620 NA coding upstream 29074 42862403 ~ 42862624 (+)
AMCG00009618 ccd22,LOC106572219,LOC104944807 coding upstream 34718 42845136 ~ 42856980 (+)
AMCG00009617 NA coding upstream 169089 42707757 ~ 42722609 (+)
AMCG00009628 NA coding downstream 1288 42914780 ~ 42927057 (+)
AMCG00009626 mon1b coding downstream 47475 42960967 ~ 42972378 (+)
AMCG00009631 NA coding downstream 63637 42977129 ~ 43003322 (+)
AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding downstream 137781 43051273 ~ 43052391 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding downstream 191987 43105479 ~ 43112950 (+)
G58008 NA non-coding upstream 255245 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 413586 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 423096 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 456546 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 463650 42427842 ~ 42428048 (+)
G58123 NA non-coding downstream 24515 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 93109 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 299218 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 335911 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 396368 43309860 ~ 43311062 (+)
G57830 NA other upstream 813457 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1292574 41596229 ~ 41599124 (+)
G57604 NA other upstream 1897039 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2786646 40086474 ~ 40105052 (+)
G57430 NA other upstream 2942498 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 523498 43436990 ~ 43444420 (+)
G58324 NA other downstream 1019460 43932952 ~ 43935762 (+)
G58522 NA other downstream 1473005 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1648285 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1671070 44584562 ~ 44603609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location