AMCG00009628


Basic Information

Item Value
gene id AMCG00009628
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42914780 ~ 42927057 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009628
ATGCATCCATCTCCTGCCGTCTCCTTACCTGGAGCCCCAGTGCAGCCCGCCATTGTCCCCGGCCGCTGGCTGAGTTGTACTGCACTGCCCTCTTGTGGCGCAGCTGAGGAATTGCAGCGCCATGGCTTAGCATTAGCATCAGCGCCTCTGGTGTCGCTGAAAACCACGCAGTGTAGCGAGATCACGGAGCGCCGGGCGGAGCTGTACCTGGCTCAGGTGTCGCTGGTGACGTCATGGCCGAGCAGAGGGCTGCGTGTGAGAGACGCACGACTTTCAGTCGGCCCACATGCAGGAGTGAAGTTGCTGTGGGATGTCGTCCCTGTCGGGAGGCTCAGTGCGGCCGGAGCTCATGGCGAGGGCGATGTCTTCACAGCTGCTCTGACTGGGAGAGAAGTTTGCTGCAGTGTCTGTAACTGGGCACTTGCAGGGGACAGCGGGGGTCCCGTCCCCCTCCGCTGGCCTGTGCCGTCCCACGCTCACCCCCGTCTTGTCCTCCGCTGTCCCAGGATGCAGCAGGAGCTGTGGCTGCAGGCGAAACTGCAGGTCCTCGCCTCCCTGAAGCCGATCCGCGCCATGAGAGCCGCTTCCACCGACAGGGCCAACTCCGCCAGCCCCGAGGATGGCACTGTCCGAGCTCAGGAACGAAAGGGTGGTGGTGACTCTGCACCCGTCGGCACCGACGCCCCGATCTCACCTTCCAAGCCGGCCAATCCCGTCAAGAGCTCCAGGACCCACCAGGAACTGCacaaggagctgctgctggcACACAGAAAGGGTCTGGGCGTGAGCAGTAAGCCGGAGCTGCAGGTGGTCTTGGAGAAGCGCCGTCGAGAGCAGACCCAGAGAGAGGAGGGCGAACTGGGCCGGAGTCCCCTGGAGGCGGAGCTGTTCAAGAGGCAGCAGAGGCAGCAGGAGATGGAGCGCCAGCAGGAGAAGGGTCTGGAGGGGAGCCAGCCCCCGGAGTTTGTGAAAGTGAGGCAGAATCTGAGGAAGACCCATCCCATCACGCCTTGCACCGGCTCCTCATTTGCGCAGAAGTCGCGTCTGCTTGCACAGGAGGCGCGGCTGTCCCGTCTGCGCAGATACTCTTTCATCCCCCCGCCCCTCGCGCGGGGCAGCGGCCTGGCCTCGGCACGTGACGGGGGCGGGTCACATGACCGGCGGGGTCACATGACCGCAGCGTCTCTCGTCACGATGACTCTAAAAGGCGCCATGGCTGCAGAGCGGCTGCAGACGTTCCTTGAGAAGATCCGCGCTGAGCTGGACCAGGTGGTGGAGTTCTGGCTGAAACACTCCCACGACCGCCAACACGGGGGCTTTTTCACCTgcctggggagggaggggcagGTCTATGACGAGCTGAAGTACGTGTGGCTGCAAGGGAGACAGGTGTGGATGTACTGTCGCCTGTACCGGACCGTGGAGCGGTTTCGCCGGCCTGAGATCCTGGAAGCCGCCGTGGCAGgAGGGGAGTTCTTACGCTCCCATGCCTGGGCGCCCCCCATGGACGGCCGGCAGAAGTGCGCCTTCTGCCTGACGCGGGACGGCCGGGCGGTGAAGGTGCAGAGGACCATCTTCAGCGAATGCTTCTACGTCATGGCCATGGACGAGCTGGCCAGGGTCACCGGCAAGGAAGAACATCAGAGGGAGGCCGAACGGGTCATGGACCTGATCGTTCACTGGGTCCGGGTCGACCCGTCGGGCCTGGGACGTCCCGAGATGCCAGGCGATGCCCCCGTCAACCAGATGGCGGTCCCCATGATGCTCCTGTGCCTGGCGGAGCAGCTGACGGCGGAGCGGGTTGTGCTGGGGGAGAAGTACAGAGAGCTGGGCCAGTGGTGTGTGCAGCAGATCCTGCAGCACGTTCAGAGAGATGGGGCGGCCATTTTGGAAATGGTTTCCACAGAAGGGAAAGAGCTGCCTGGCCATGCCCTGGAGGCCGGCTGGTTCCTGCTCCAGTACGCCGCCCGGCACGGGGACGAGGGGCTGAAGAAGACGGCCGTGGAGAAGTTCGTGCGGCTGCCCTTCGAGACGGGCTGGGACGCGGCCCACGGCGGGCTCTTCTACTTCCAGGACGTGGACGGCCTGTGTCCCACGCAGCTGGAGTGGAGTATGAAGCTGTGGTGGCCACACTGTGAGGCTCTCATCGCCTTCCTCATGGCCTACAGCGTGACCGGGGACCCTGCCCTGCTGGACTCGTTCACCCGGGTCTACGACTACACCTTCAGCCACttccCGGATGAGAAGCACGGGGAATGGTTCGGCTATCTGACCCAGCAGGGTGCGGTGTCCCTGGACTTCAAGGGAGGGCCTTTTAAAGGGTTTTTCCACGTGCCGCGCTGCCTGTACATGTGCGAGTGCCTGCTGGACGGCCTCCTGGGACGCCCCCGGGCCCTGTGAGACTCCACAGGGCGACCGGACGCTTCCTCACGGTCGGACCCAGAGGTGGCGTGACCCTGGGGGGGCGAGCACGCGTGTCTGAGGAGGGGGGGGCTCAGCGTCTCATCACAGGCGTGGAGGTCCACCTCGGTATCAGTTCTGGCGACACAACGCCTTGTTTTTTAATCACTAGAATGGGTTGCGATGGTGAAGTGGGGTCCGCGGGCCTTCAAGGTGTGTCAGTTGGCGTGAATGGAATAAGGGCTTCAGATTCGACTTTCTTAGACCTCATCTTTACCTCTTGATGCTGTTACTCTGCTATGGGACATGCGCCTTCGATTTTTGACTAGGCCTGGGCCCTGTTGCATTGTGGGAGCTCGTGCTGCCTTCCTAACCCGACCCTCGAGCTCAGTGCTTGATCTTTTTACCTCAAACGATCTCTCACTCCATCCTGACACTCCCTTGCTTTGGGTTAACAGCCTCTATCCCTTCTCTGGCCTCGATCTTTACACCTCTATGGGGgtcctgctccctctctccagtGTGAACTCTGACCCCTCGCCCCCCAGTTTCCATCTCTAGACTTTCTCTAACACGCATCTTGACTGAATGGCTTGAATGAAGTGAATCCGCACCGCTTATGAAAACGGGCCAAACGCAAGGGAAGCCGCTTCACTTCCTGGCTGCTGCAGATTGCACTCGCTCTTAATGAgatatttggttttattttcttgaactgCAAAGCACTTTCACTAGCAAAGGGGCGGTGTGTGGTTTAAACATTTGACATTAGTCTGTTTTAACTGCGGGGGGTGGATCTCACAGGACAATCTTTCTCACCACTGTGTGACACTGAACTCCAATATCATATAAAAGAACATGTCTTTTGTATACACTGTCTCTTTCTCGTGTATATCCTTCACTTCGTAAGAATGGTAACCCCACTCCAGACCACCTGTCCTGTAGgctgtgttgtttgtttacCCGAGGCCTCACTGTATCACGCTGCATTTGCgttgtttgtaatttgtttagtcACACACTGTAACCGAAGCCGCTGAGGCCGgtcaaattgaattaaatcttATAAGTGTcggaataaaaactaaaactcccACTGTGGACCCTGTCCTCTGCATAGTCTCCGGTGTCTTGTCCTCAGTTGTCTGTCAGATGTTAAGTGTTGTTTTTAAGCCTTTAAgtgtcccccctcccccaaccacTAGagtgtcattttttaatgttgcacTGTCTGTGCGCTATGAACATCTGTCGCCGCATCTGGCAGCGACTCCTAACGAAGCGATCCTGGCAATCGAGTCGTGTGAAGGGAAGGGGACCAACTTGTGCCGAATCAGCGCTGAATGGAGCTGAAGAAcggatctgtgcaaaactgatct

Function

GO: NA

KEGG:

id description
K01787 RENBP; N-acylglucosamine 2-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009628 True 3779 mRNA 0.59 17 42914780 42927057

Neighbor

gene id symbol gene type direction distance location
AMCG00009627 nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043 coding upstream 1288 42891698 ~ 42913492 (+)
AMCG00009625 NA coding upstream 26289 42887108 ~ 42888491 (+)
AMCG00009619 NA coding upstream 28061 42862696 ~ 42886719 (+)
AMCG00009620 NA coding upstream 52156 42862403 ~ 42862624 (+)
AMCG00009618 ccd22,LOC106572219,LOC104944807 coding upstream 57800 42845136 ~ 42856980 (+)
AMCG00009626 mon1b coding downstream 33910 42960967 ~ 42972378 (+)
AMCG00009631 NA coding downstream 50072 42977129 ~ 43003322 (+)
AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding downstream 124216 43051273 ~ 43052391 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding downstream 178422 43105479 ~ 43112950 (+)
AMCG00009636 NA coding downstream 262548 43189605 ~ 43213919 (+)
G58008 NA non-coding upstream 278327 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 436668 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 446178 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 479628 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 486732 42427842 ~ 42428048 (+)
G58123 NA non-coding downstream 10950 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 79544 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 285653 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 322346 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 382803 43309860 ~ 43311062 (+)
G57830 NA other upstream 836539 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1315656 41596229 ~ 41599124 (+)
G57604 NA other upstream 1920121 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2809728 40086474 ~ 40105052 (+)
G57430 NA other upstream 2965580 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 509933 43436990 ~ 43444420 (+)
G58324 NA other downstream 1005895 43932952 ~ 43935762 (+)
G58522 NA other downstream 1459440 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1634720 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1657505 44584562 ~ 44603609 (+)

Expression


Co-expression Network