AMCG00009634


Basic Information

Item Value
gene id AMCG00009634
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43258520 ~ 43266899 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009634
TtgacctgtctctctcccttcccccgCAGTGTGAAAACAGCTCCAGTCTGCCATGGCTTCATTTCTGCATCACTGCCCCTTTCTGACCACTGTGCCCAGGCCCATCCTGCGCAGAGCTGGCGTCTCCCTCTTCAACTTGGCAGATCGCTGCCCCGTCATCCTCCGTGGCCTGGCATCCTCTGCCCCCCAACAGCAGAGGGCCAGAGAGACCACGCCAGCTGGCTCCTCTCCCCAGCGCTCCCTGGCTCAGGATGCCACCCAGGCCGCCGTGTCTCTGTCCTCCAGCTGCCCCTTCGTGTCATCCCAGATTCCTGTGGTCCAAGCCAGCCCTGAGGTGCAAGAGGATGTTCGAACCTCTAATACAGGGTCTGTGAGCGCGGTGCTGAAGGGGCTCCACTCCTCCCTGAAGCAGAAGATGCAGGACCTCAGCACCAGGCCTGCCCGTCCAGAGAGTCTGCTGATCAGAGACAACATGATTGCAGCGCAGCCCAGCTTTGACTATGACCGCTTCTTCGAGGCTAAGATCATCGAGAAGAAGCAGGACCACACTTACCGAGTCTTCAAGACAGTGAACAGGAGGGTGGATGTCTTCCCCTTCGCCGAGGACTACTCCCAGACCATCCAGCAGGCCAAGCAGGTGTCTGTGTGGTGCAGCAACGACTACCTGGGCATGAGCCGCCACCCCCGCGTGCTGGACGCCATCCGTGATACCCTGGATCAGTACGGGGCCGGCGCCGGTGGCACTCGCAACATCTCCGGTACCAGTAAATTCCACGTGGACCTGGAGCGTGAACTGGCAGAGCTGCACGGCAAAGACGGGGCGCTGGTCTTCTCCTCCTGCTTCGTGGCCAACGACTCCACCCTCTTCACCCTGGCCAAGATGCTCCCAGGCTGCGAGATCTACTCGGATGCGGGGAACCATGCCTCCATGATCCAAGGCATCCGCAACAGCGGTGCCCCCCGGCACATCTTCCGCCACAACGACGCGCAACACCTGGAGCAGCTGCTCCGCAACTCTGACCCCAACACCCCCAAGATCGTGGCCTTCGAGACCGTGCACTCCATGGACGGTGCCATCTGCCCATTGGAGGAGCTGTGTGATGTGGCCCATCGCTACGGCGCTCTGACCTTTGTGGACGAGGTCCACGCCGTGGGGCTGTACGGGGCGCACGGGGCCGGTGTGGGCGAGCGGGACTCCATCATGCACAAGATCGACATCGTCTCCGGGACCCTGGGGAAGGCGTTTGGCTGCGTGGGGGGATACATCGCCAGCACCGCCGCCCTGGTGGACACGGTGCGCTCCTACGCCGCCGGCTTCATCTTCACCACCTCCCTGCCGCCCATGGTGCTGGCTGGGGCTCTGGAGTCGGTCAGGGTGCTGAAGGGGTCCGAGGGCCAGGCTCTGCGCCGGGCCCACCAGAGGAACGTCAAGCACATGAGACAGCTGCTCCTGGACGCCGGGCTGCCTGTCATCAACTGCCCCAGCCACATCATCCCCATCCGGgtggGGAACGCAGAGCAGAACTCCCGGGTGTGTGACTTGCTCCTGGAGAGACATGACATTTACGTCCAGGCTATCAACTACCCCACCGTGCCCCGCGGAGAGGAGCTGCTGCGCCTGGCCCCCTCGCCACACCATTCCCCCGCCATGATGGACTATTTCGTGGAGAAACTGGTGGAGTCCTGGCAGGAGGTGGGGCTGCCCCTGAGCCGCCCGATGGCTGCTGCCTGCAACTTCTGTGATCGCCCGCTGCACTTCGACCTGATGAGCGAATGGGAGAAGTCCTACTTCGGCAACATGGAGCCGCGGTACATCACCGTGTGTGGCTGAGCCCGGAGAGAGGCGGCAGGACGTGGCCGTCAGCAGCGCTTGTCAGAATGATCTACTGTCTCTTACCTGcacatgggggtggggggaacaAACCTGCAAATATGGCTTATTTTAGATTGTGTCCTATGAGAAATTAGTTACCTGTTAAAGGGCAAACCTGAATGTCTCTTCAAATGGGAAATGTGGCTAAAAATATAGCTAAGtacaaaagtatttttcctGATATTCATCCACATTCCCCTCTTTGAATATTGTAAGAAAATACGTTGACAGCTATTTTTGAgtgtataattatgttttttttctcttaaaccagctttatattattatcatcatcattattattacatattttgtatccCCTATTATCAGGTAAGGGACAATAGATAATTACTTCCCCCCACTCTTAAATAATCCTTCCTTCTTTGCACTCATTCCTCTTTCTTTACACATCCTCTGCTACTGACTCTGATACGACTGTATGACGGGGccaaagaataaatacattcctgTGGTTGattctcaaatgttttttccttgaCAGTCTCTgcccttttttttcccatttggCTTTCTGTATACATTGATCTGCTCTGTTCAGGAGCTTTAAAAATGCATCGGCATTGGGAATAAGATGTAGAAAATTTAGGAACTCATGGTTTGACGAGTGAAAATCCCGAGACCATCACTGCGTTATTTCAACACAGCGACACCTGCACTTTATGCACTTTCCAGAAGTATCTTAACAGAGTGTGTAGAGTAGTAGTAAGTTTTGCAGACTTGTGTGCCAGTGGAGTGTCAGTGTGGGCTGGCTGCCTGTGAGTTTAGCCATCATCGCCACTGTACATGCTGatgaaataatcataataggATGTCGCAGAGAAAAATGCAGACTTCCAATGTTTCAGATCTGCTAAGCTTTTCTTGTGTGTCACGTTCACAATACTGTGTAATCTGTATCTCTGAATAATACTCAAAATATCCCAATTATTAATGGAAATGATGCCAACCAAAATGGAAAATTCCATACAATACCAGTTCAGTGTGGTTTGAAAGTAAATACACTAGTCGTGGCTTTCAAACTCCAGTGCTCTATAGCATCCCTTCTCCCTGCAGGTTGATACAGGCTCTTGTAAACCACTGTCTGCTTATGTTCTGAGTGAATTGAAATGAGTCTTTCCTTTAGCATACGAGCCCCCTGCCCTCCCTGATTTAAAACAGCCCCTGAGCTTAGAAGATACATGTAGCAGC

Function

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0020027 hemoglobin metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009634 True 3082 mRNA 0.54 10 43258520 43266899

Neighbor

gene id symbol gene type direction distance location
AMCG00009639 NA coding upstream 5458 43252202 ~ 43253062 (+)
AMCG00009636 NA coding upstream 44601 43189605 ~ 43213919 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding upstream 145570 43105479 ~ 43112950 (+)
AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding upstream 206129 43051273 ~ 43052391 (+)
AMCG00009631 NA coding upstream 255198 42977129 ~ 43003322 (+)
AMCG00009635 fam50a coding downstream 1028 43267927 ~ 43273372 (+)
AMCG00009640 NA coding downstream 48729 43315628 ~ 43318501 (+)
AMCG00009646 NA coding downstream 149932 43416831 ~ 43424850 (+)
AMCG00009656 NA coding downstream 404870 43671769 ~ 43720150 (+)
AMCG00009654 NA coding downstream 469698 43736597 ~ 43740863 (+)
G58195 NA non-coding upstream 8879 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 45492 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 248470 43006601 ~ 43010050 (+)
G58123 NA non-coding upstream 319646 42938007 ~ 42938874 (+)
G58008 NA non-coding upstream 622067 42629539 ~ 42636453 (+)
G58215 NA non-coding downstream 42961 43309860 ~ 43311062 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding downstream 52017 43318916 ~ 43324579 (+)
G58291 NA non-coding downstream 411452 43678351 ~ 43680953 (+)
G58304 NA non-coding downstream 606882 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 642689 43909588 ~ 43915760 (+)
G57830 NA other upstream 1180279 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1659396 41596229 ~ 41599124 (+)
G57604 NA other upstream 2263861 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3153468 40086474 ~ 40105052 (+)
G57430 NA other upstream 3309320 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 170091 43436990 ~ 43444420 (+)
G58324 NA other downstream 666053 43932952 ~ 43935762 (+)
G58522 NA other downstream 1119598 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1294878 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1317663 44584562 ~ 44603609 (+)

Expression


Co-expression Network