AMCG00009635 (fam50a)


Basic Information

Item Value
gene id AMCG00009635
gene name fam50a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43267927 ~ 43273372 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009635
CGGAGGAGACGAGAGCGACGCCGTGTTGTGCATTTGGGGAGTTTTGAAGCGAGGGATTTTGTTGTGTTAAACCACTTTTCTACGGAGCAGAGGCATGGCGCAGTACAAGGGAGCCGCCAGCGAGGCCGGCAGGGCCATGCAGCTGATGAAGAAGCGGGAGAAAGAGCGGGAGCAGCTGGAGCAGCTCAAACAGAAGATAGCCGAGGACAACATGGTGAAGTCCAACATCGATAAGAAGTTCTCGGCCCATTACGATGCGGTGGAAGCCGAGCTCAAGTCCAGCACAGTGGGTCTGGTGACCCTCAATGACATGAAGGCCAAACAGGAGGCGCTggtgaaggagagggagaagcaGCTGGCCAAGAAGGAGCAGTCCAAGGAGCTGCAGCTGAAGCTGGAGAagcagaaggagaagaagaggaaggaggagCAGAAGAGGAAGATTGCCAGCTTGTCCTTTAACCCggaggacgaggaggacgaggaggaggaagaggaagaggaggaggaggaggaagAGATCCccgtgaagaagaagaagctggGGAAGAACCCAGACGTGGACACCAGCTTCCTGCCCGACCGCGACCGCGAGgaggaggagaaccGTCTGCGGGAAGAGCTGAGACAGGAGTGGGAGCGCAAGCAGGAGAAGATCAAGAGTGAGTGCCTGTGTTGTTGTTCAGTAATCATCTGCGAGAACAGATGGCAAGGCAGgagagcgggggtggggggagaaaggGATTGGTGTGCTGGCCGTGTTTGCAGCGAGCATCGCCCTCTGCAGATCAGACTTCCCGAGGAGCTGCGAACGAGTCTAATGTCGTTTGTTCAGTCTCTCACGCTGTGCTTGGTGTCTCGTGGGGCAGGTGAGGAGATCGAGATCACCTTCAGTTACTGGGACGGCTCTGGGCACCGGAGGACTGTGAAGATGAAGAAGGGGAACACGATGCAGCAATTCCTGCAGAAAGCCCTGGAGATCCTGCGGAAGGACTTCAGTGAACTCAGATCTGCTGGCGTGGAGCAGCTCATGTACATCAAGGAAGATCTGATCATTCCACATCATCACAGCTTCTATGATTTCATCGTGACCAAAGCCAGGGGCAAGAGCGgtCCCCTGTTTAACTTCGACGTGCACGAAGACGTCCGATTACTCAGCGACGCCACGGTGGAAAAGGACGAGTCTCACGCCGGGAAGGTGGTGCTGAGGAGCTGGTACGAGAAGAACAAGCACATCTTCCCCGCCAGCCGCTGGGAGCCCTACGACCCCGAGAAGAAGTGGGACAAGTACACTatccGATAA

Function

symbol description
fam50a Predicted to be involved in chromatin organization. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Armfield syndrome. Orthologous to several human genes including FAM50A (family with sequence similarity 50 member A).

NR:

description
PREDICTED: protein FAM50A

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K13119 FAM50, XAP5; protein FAM50

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009635 True 1303 mRNA 0.56 12 43267927 43273372

Neighbor

gene id symbol gene type direction distance location
AMCG00009634 NA coding upstream 1028 43258520 ~ 43266899 (+)
AMCG00009639 NA coding upstream 14865 43252202 ~ 43253062 (+)
AMCG00009636 NA coding upstream 54008 43189605 ~ 43213919 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding upstream 154977 43105479 ~ 43112950 (+)
AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding upstream 215536 43051273 ~ 43052391 (+)
AMCG00009640 NA coding downstream 42256 43315628 ~ 43318501 (+)
AMCG00009646 NA coding downstream 143459 43416831 ~ 43424850 (+)
AMCG00009656 NA coding downstream 398397 43671769 ~ 43720150 (+)
AMCG00009654 NA coding downstream 463225 43736597 ~ 43740863 (+)
AMCG00009653 NA coding downstream 470082 43743454 ~ 43748128 (+)
G58195 NA non-coding upstream 18286 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 54899 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 257877 43006601 ~ 43010050 (+)
G58123 NA non-coding upstream 329053 42938007 ~ 42938874 (+)
G58008 NA non-coding upstream 631474 42629539 ~ 42636453 (+)
G58215 NA non-coding downstream 36488 43309860 ~ 43311062 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding downstream 45544 43318916 ~ 43324579 (+)
G58291 NA non-coding downstream 404979 43678351 ~ 43680953 (+)
G58304 NA non-coding downstream 600409 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 636216 43909588 ~ 43915760 (+)
G57830 NA other upstream 1189686 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1668803 41596229 ~ 41599124 (+)
G57604 NA other upstream 2273268 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3162875 40086474 ~ 40105052 (+)
G57430 NA other upstream 3318727 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 163618 43436990 ~ 43444420 (+)
G58324 NA other downstream 659580 43932952 ~ 43935762 (+)
G58522 NA other downstream 1113125 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1288405 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1311190 44584562 ~ 44603609 (+)

Expression


Co-expression Network