AMCG00009639


Basic Information

Item Value
gene id AMCG00009639
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43252202 ~ 43253062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009639
ATGTCGGAGAGGACCTCATTCCAGACCTTCGTGTTCGTGGACCTGGAGGGAACGGACCTGGACCGGCCGCGGCTGACCGAGCTGTGCCTGACGGCCGTGCACCGCTACTCCCTGGAGaaccacccccctcccccgtctcctcttcctcctctcctggCTCCCTCTTTACCCCGTGTCCTGGACAAACTGTGCCTGTGTGCCTACCCCCACAAGCCCGTGTGCCCCCGTGCGGCGGAGCTCAGCGGCCTGAGCAACGAGAACCTGACGGAGAACGGGAAACCGGGCTTCGACGGGGCGGCCGCCACCCTGATACGCGCCTTCCTGGAGCGCCAGGCGCCGCCCGTCTGCCTGGTGGCGCACTGCGGCCTGCGCTACGACTTCCCCCTCCTGCGGGCCGAGCTGGGGCGCCTGCAGGCCGACCTCCCCAGCGGCCTCTTCTGCGCCGACTCTTACCTGGCCCTCCGCGATATCCTGGCTCCCCGGGCTGGGAGCTTCAGCCTGCCGGAGCTCTACCGCTCCTTCTACGGCAGCTACCCCCCTGTCTCGCACACGGCCGAGGCGGACACCCTGGCCCTGGTCTCCGTCTTCCTGGCGAAGGCGCCCGAGCTGCTCAGCTGGGCGGACCTGAACGCCCGACCCTGGCTCGAGGTCCAGCCCAAGTACCAGCTGCCCATCAGGACACCAACGCCGCAGAAGGCACCCAAAAGGGCGGTGGAGTCGAGGacggggggagggagggagggagtgacaGTCGGTGCCGGACCCCCAGTTGTGAGGTGTGAGGTGCATCCACACCCCCATGCGCAGACTCCGTGCAGTCGGCCGGGACCCACGGACGCTTTAGACCACCGGAATGATTAG

Function

GO: NA

KEGG:

id description
K10791 TREX2; three prime repair exonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009639 True 861 mRNA 0.68 1 43252202 43253062

Neighbor

gene id symbol gene type direction distance location
AMCG00009636 NA coding upstream 38283 43189605 ~ 43213919 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding upstream 139252 43105479 ~ 43112950 (+)
AMCG00009632 kcnd1,LOC107601760,LOC107584898 coding upstream 199811 43051273 ~ 43052391 (+)
AMCG00009631 NA coding upstream 248880 42977129 ~ 43003322 (+)
AMCG00009626 mon1b coding upstream 279824 42960967 ~ 42972378 (+)
AMCG00009634 NA coding downstream 5458 43258520 ~ 43266899 (+)
AMCG00009635 fam50a coding downstream 14865 43267927 ~ 43273372 (+)
AMCG00009640 NA coding downstream 62566 43315628 ~ 43318501 (+)
AMCG00009646 NA coding downstream 163769 43416831 ~ 43424850 (+)
AMCG00009656 NA coding downstream 418707 43671769 ~ 43720150 (+)
G58195 NA non-coding upstream 2561 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 39174 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 242152 43006601 ~ 43010050 (+)
G58123 NA non-coding upstream 313328 42938007 ~ 42938874 (+)
G58008 NA non-coding upstream 615749 42629539 ~ 42636453 (+)
G58215 NA non-coding downstream 56798 43309860 ~ 43311062 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding downstream 65854 43318916 ~ 43324579 (+)
G58291 NA non-coding downstream 425289 43678351 ~ 43680953 (+)
G58304 NA non-coding downstream 620719 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 656526 43909588 ~ 43915760 (+)
G57830 NA other upstream 1173961 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1653078 41596229 ~ 41599124 (+)
G57604 NA other upstream 2257543 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3147150 40086474 ~ 40105052 (+)
G57430 NA other upstream 3303002 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 183928 43436990 ~ 43444420 (+)
G58324 NA other downstream 679890 43932952 ~ 43935762 (+)
G58522 NA other downstream 1133435 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1308715 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1331500 44584562 ~ 44603609 (+)

Expression


Co-expression Network