AMCG00009641 (dedd,LOC106572035,LOC107665071,LOC107599036,LOC107603111,LOC107755304)


Basic Information

Item Value
gene id AMCG00009641
gene name dedd,LOC106572035,LOC107665071,LOC107599036,LOC107603111,LOC107755304
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43318835 ~ 43331478 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009641
GCCAAGATGGCTGACTCTTTTGGGTTTTAGTTAGAGGAGGAcgaaaaaaacaccaaacaatcttgttaaatactttaaaaacaatagagAAAAGCAAGAAACCCGTTAACGGAGTAGGAGATACAGTTTAAACTCAACCGGAAAGGAGCAAAATAAGCACAACCGAGGCGGGACCGTACAAACGTTTTCCTGTGGAATAACCCCAGACAgcctgtgaaaaaacaaacacacacggatatatttaaaagtaaacaaatggtCTCTTATATGATCCTGTTTGCAACCTAACTCATTAAACCCAGCAACCACCGGGGTgggaaatgtattgattatatttCCGTTTTTGTTCCGCGATGGTTTGTGGGTCGATAATCCAGTACAGTTGGATTGAAGAAAGGGActaaagggaggaaaaaaagaaagaaaaacgcCCAGAATTACATCCTCCGCTCACATCTTTGGATCCCTACGTTTTTTTATAAAGAAGTTTAATATCCGCACGTCGAATAAATGTACAAAGAAGCCATCGGAAGGCCAGAAGAACGAGGAAGGAGAGTAAATGAAATCTGAGGGGTGGCCAGCAGTTGTCATTCAGGTCAACCTGTGTGCTGAAAGGAAAGGCGCTCTCGAGGTGACTGACTCCACCCAAAGTGATGACCTCACAAGCGCCCAACCACAACCAGCACAACACTAACCACTCGCCCCACTTGCTGATTACAAGGAACCTAGCCACCAATCCGGGCAGGCCTCCCAGCCACGCCCACAACCCCTCAGACTATCGCACCTCCTACAGCTCGGCTTCGAGGGCTTCAGCGATGGGGGGTGTGGCGTCCACGACCAACCCCGGTGGCAGTGCGGGGCGGGGTCCATCGTCCCGGAGGCCACAGAACGGCAGGTTCGAGCCCTGGCCAGAGGAGGCCGTCGATAGTGCCTATGGCTTGTACTCGCTGCACAGGATGTTTGATATAGTGGGGGCCCAGCTGACCCACCGCGACGTGCGCgtcctctccttcctcttcgTGGACGTCATTGATGAGTACGAGCGCGGAGGCATTCGCAATGGCCGGGACTTCTTCCTCGCCCTGGAGCGGCAAGGGAGGTGCGATGAGACCAACTTCAGGCACGTGCTGCAGCTGCTCCGCATCATCACTAGACACGACCTGCTGCCCTACGTCACTCTCCGGAGGCGACAGACTGTGTGTCCAGATCCAGTGGATAAGTATCTGGAGGAGACGTCGGTCCGATACGTTTCACCCAGAGGCGTTGGGGAGAACAGGGGGACGCCACCTCAGAGAAGGACAGGTGCACAGCCTCTGATCTGCTGCTCCCCGACCGGGCCGCAGGTGTGCACCGGCAGAGGCAAGCCCGCCCCCAGCGCCCCcagcaggaagaggaagagagcgCACAATGCCACAGACTGCAGGGAAAAACAGACATGCGGTAAGAGCCCAGAGGCCCGGAACCgctccagccctggtcccggAGAGCACAGTGTGTTTCAGAGCAGCCCCAGGGGGGAGGGAACTGGAGGGGCTGGGGTCTCTTCTGGTTTAGGTTCCAGGACCGaagccctccaggaccagggctctCCGCCACTGTTTCAAAACATCCGGCTGCGGGTGCGAGCAGAGTACTGCCAGCACGAGTCGGCCCTGCAGGGCAACGTCTTCTCCAACAAGCAGGAGGCCCTGGAGCGGCAGTTCGAGAGGTTCAACCAGGCCAACACCATCCTGAAGTCGCGCGACCTCGGCTCCATCATCTGCGACATAAAGTTCTCAGAACTTACGTACCTGGATGCGTTCTGGAGGGACTACATCAATGGCTCCCTGCTGGAGGCCCTCAAGGGCGTGTTCATCACCGACTCTCTGAAGCAGGCCGTGGGCCACGAGGCCATCAAACTGCTGGTCAACGTAGACGAGGAGGACTACCAGGCCGGCCGGCGGAAACTCCTCCGCAACTTGATCATAGGGGGCGCCGGAGCCAGGGAAGCCTCCTAGGAGCCACATTGGACCCCCACGCAGGCTCCCCTggtgtacatatataaataacatgccATTTACAGGAGTCgctcagtgtgcgtgtgtgtggtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtatgaaGTTGTGGAAGACCAAGGCAGGTTGGAGTTCTGCAGGGGTGATTTTGAAGAAACGGGAGGTAACTTTTGATTAACTTTGTAGAAGTGAAGGTGAAAATGTTTTCTAGGTTATTGGAAGTATGTCCAGCTCATGTGGGAACTCTTGTAGGCCTGGAAAATCTGTGTGcagcatatatacacacacctagATGCCTGAATACCCGTTTGCCAGTCTTTCCAGAGATCAGTTAGAAATAATACATGTGGGTTAAGAAAGGTTTACCACTGTATTGAAACGTATTCAGGTCATCCAATTATACCTCAGTTAGAGGCATAGTGTAAACGCAGAACACATGTGATTTAGCACCTGTCAGTTCATGCCTAGTAACCCGTGCTGGAGGGTGTCTCTGTGCGGAGGGTGAGAAGCTTGTTTAGCCCATGCAGTCTATCCTGACGGACTGTAGTCACTGAAGCCTGTGAATTCCTTCATCCACAAGGCGGGACAGTCGAGGTGCTCTTGCTAGAATGGAGTGATTTTGCCGATTGCAGAGCTTCCTGTGAATTAGCTGGTGACAACACAATTTGTAGCTACTCAGACTTCGAGGACAGTTTAGTTCAAGTCTCAAACTTTCCAAATCCCTCCAGTCTTCTGTAAAACTGGTTTGCGTCATTATACACCAACGGTTTGGACGCTGGCAGAGAAAGACCAAATGAAAACGATTATGGGAAATGTGTTTGAGCCTTTGGGgtcttttcattaaatgtaaatttgcCAGATCTGTCTGGTTTAACAACTGAGGGTCAACTGACGTTAACCATGGTGCCAAATCTGCTCTGAAATAAAACTAGGTAGATGTAGGAAATATGTGAGGTAAAGCCTACTTTGAACAGTTTCTAATCATCATCCAAACACTCGTCCATTGAGTTAGACTTCTGCTTTGTGAAAACGTACTGTTGATCAGTCCTGTAGAAATCTGCTCTTAAAAGTGGAAAATCGTGTCCGAGGCAAAGAGTTGTTGTTCATAGCGGCAGCAGCCTGAAAGGGTGAGAGAGTTCAAAGTCAGTTGAAAGTTACCTCTTGTTTCGGAGGCTTTCAAGACGTGTTTTTGTCCCCTGTGCTGTCGTTTGACTGTGTTGAAGTGCTCCACGGGGGTCGCTGCTGTCCGAGCCTGCAGTGGGGTCTCGGATCTGCAGCTACTTCATATGTGATATAGTATCATTATCGGTTCCTTCAGAAGAAGGCTCCCCCGCCCAATCCCCCGTTCACACACTGTTCTGCAAGATGAGAGAACTGCCATTCAACCGCTTCTCTCTTAATACAGTGGTTTGGTTAAAGGCAATTATGCCAtggattattatatatacacgcGTGCTTTAATTTTCTCCCCCTTCCTTTCCTATACacttgtgcTACAGTAGGGGTGTGTCAACGCACTTCCAATATGATGTCATAGTGAGGTTAATGTGGGAGAACACTTCTGCAGCAACATAATAACCACCTGCAAAATAGATCCCCCCCCCTTTCAGAATATGACTTCTACCCTCACCTGCCCTAATATTTGTCCAGTGTTGATCTGAATCTCACTCCTGGTCCCAAAGAGCCCTGCTCATTTTATTGGAAAcctaaaaaatgtttaaaacattaatttaaattgtatttaattcgGTCATGTCGGTGTCGGTGAGAGCTCTGGAGGAACTCAAAAGCAGACGGTCCTGTGACACTTTGGCTGTAGTCAATCTTTGCCGACTGCTGTCAGTTGTGTTCCAGGGCTGCAGATTTCTGGATATTTTTGCCCCCTTTCTTCTCCCGGTCCAGTTCGACTTGGGTAACTTCATTGGTCTTCTCACTTTGTCCGCTCAGTTTTCAACAGTTTACAGCTGTGCTACGACACCATTCACCATCTCGCCAACATCCAAACCCTGGCCATTGACGTGTTTCTCCCTGGTGCAGTTTGAGGGTAATGTCATTAACAAGCGTGGCTCCCACTTAGACCTGATTAGCCACTTAAAAACACCACGTGACTACTTAACATCTGCAGCCACCTCAGTTGGGTTTGTTCATAAGGACTTAGCAGACTCTGTAGGGTTTTTGACCAGAGAGTTTAATTGgaagcttttttgttgtttagtaAACCCTGCAACCCCTGTAGGTCTTATACTTGTTCCAAGTTTCTACTTTGTAAAGTATATGGAATCAAGAAACTAAAGTGTTCTGCAGATCAATTGTCCAAATGTTCCTGTGTCGGATTGGCACTTTGAGTTTGAATGAATTATTTTTATGCAGTACAGATTAAATGGAAAGTGCTGCAGGCATTCGTGCCGTTGCAAACCTTTTTAAAAGCCCTGTATCGTGCAGTTAGCTATGCTTTTAAcacttcagttttaatttgcgttttcttttatattgtgTTCTACATCGTGAGAGAGAAGTGCCCCATTGCATCCCGGCTACTGCTCATAGTGTCTGAAGGAGTTTGTGATAATGTATTCTGTCCGTCTTTGAAAACTTCTCTTATCCAGGCTCCTTGTCCCATACTTCCCTGAACGTGGGGCATCAAGGACTACCAGGGCTGATCGTAGATCTGATTCGGACCGCTGAAGAAACCAGTGCGAAATGAGCATCATTCTGCGTCTGTGATCTGTAGGAAACCTGTACAGTCGCTAAAGAGATAATTGAGACCCTAATAACCCTTCTTGCAATCGAAAGAACTGTAGAAGTTTTAAAAAGGTAACTCCTTGCCCACTGAGACAACATAAACTGGACTGGAAGTCTCTAAACAATCAGAAATACAACTCTGTACTCCACAGCACTTTATTTTCTAGCATTGAAATAACATCCACAGATAGATAACCCATATTGGTGAAAATGTACCACCTGCAAAggcatgttttgtatttttttggcattaggattttaatatatttttttaatatagtgtcAGCTAGGAGGGCAGGAGGTGCTAAGGTGCtcagtttgtatgtgtgtatgtgtatgcagtACAAGATGACCCCCTGTAATAATTTGACACTAATATAGTTGTTTGCACACTACGGAAAGTTCATTTCTGTGGCAAATGTTAATCCGGTTCTCACAGAATAATTTAGTAGGACAATTGAATACTTTTCAAAAGGTTCTGAGAATTTAACTTGGTTGAGTGTGTTTGCTGTGTGACTGTTTATCCACAGCTGTATAAAGTCTACTGGAGAAGGTTCAAAAGCTTGGAAgaaagctttttattattattattattattattatggtgaaATTTGAACGTTATCCTTGAGTACCCTTTGTTATTGCAAGAGGGAGTTGTCCAGTCAATCTTATTTATAGACTGTTACATTAATATGTCTTGAATAAACTGTGTACGGCTGTAGAACTGTGGGGGAAAGCTTCACTGCGTTTTGGAAGACTTGTCATTTCAAATCCTAGGCTAAATGGGCGGAGTTTTATAGCCAGTGGCGGTCGGTGATTCTGCAATGTTCGGTTGCAGACTGTTGGTTCCAAAttatgcatttgaaataaacagCTTGACCGCCATCAACTGAAAGCCCTAACCCTTCccttaaaagcaaaaaataagtaaaatttgTTTTTGATCCAAAGAcctttgtaaaaatgtaatgaaagcaGTAGTGTATATACGTTAAACTTGAAAACATCTCGTCTTCACgctatgtaattttttttttctcgttatTTTGTTTGGAAGAATGTGATGTGAAAGACTGTTCAGACGTTGATTTTTGGTTGCACAGATCTCTGGTGAAGTGGCACAAGTGCAGACTGTTTTGTGTGCGGGTGTGCTTGTGGGACACGTCTCGTTAAAGACTGCTTTTGAGTTGGGAATGGAGTTCGGTCAACTTTAATGGGAGGcaagattatataaaaaaaaaaaaaacagggcgGAGTCTTCATTTGTCTGATTGCAGAAGttatcctattaaaaaaaaaaaaaaaaaaaaacattggaaaataaacaatacttgATAAAGCCAACCGGATCTCTCAGTGGCAGTGAAAACCGTGAACTGTCTAACAATTCTGGCCACAGTGCCGGCCAGCCCTGCTTTTCTTTATGTATAGCTtgtgatataaatataataaaatatcgCCAAATAAAAATAGCCCTGAAGTCTGTCTGCTTATTCTTAATTCGACTGTGAGTGCCCAGCACGGCGTGAAGTCAAAAC

Function

symbol description
dedd Predicted to enable DNA binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DEDD (death effector domain containing).

NR:

description
PREDICTED: death effector domain-containing protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009641 True 6303 mRNA 0.46 6 43318835 43331478

Neighbor

gene id symbol gene type direction distance location
AMCG00009645 NA coding downstream 18311 43297059 ~ 43300524 (-)
AMCG00009638 NA coding downstream 32767 43278543 ~ 43286068 (-)
AMCG00009637 NA coding downstream 98836 43217748 ~ 43219999 (-)
AMCG00009629 NA coding downstream 376156 42933117 ~ 42942679 (-)
AMCG00009630 NA coding downstream 387621 42927576 ~ 42931214 (-)
AMCG00009643 NA coding upstream 953 43332431 ~ 43338522 (-)
AMCG00009644 NA coding upstream 7186 43338664 ~ 43341665 (-)
AMCG00009642 NA coding upstream 13748 43345226 ~ 43373271 (-)
AMCG00009648 wdr13,LOC107584863,LOC107552201 coding upstream 92427 43423905 ~ 43431555 (-)
AMCG00009649 NA coding upstream 102934 43434412 ~ 43439221 (-)
G58149 NA non-coding downstream 308722 43006601 ~ 43010113 (-)
G58039 NA non-coding downstream 621702 42696897 ~ 42697133 (-)
G57998 NA non-coding downstream 778722 42539439 ~ 42540113 (-)
G57988 NA non-coding downstream 840723 42477721 ~ 42478112 (-)
G57982 NA non-coding downstream 850076 42468185 ~ 42468759 (-)
G58246 NA non-coding upstream 55705 43387183 ~ 43387918 (-)
G58277 NA non-coding upstream 144355 43475833 ~ 43476088 (-)
G58336 NA non-coding upstream 199957 43531435 ~ 43568662 (-)
G58374 NA non-coding upstream 538876 43870354 ~ 43871117 (-)
G58377 NA non-coding upstream 542303 43873781 ~ 43875739 (-)
G58025 NA other downstream 645128 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 1262707 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 1491901 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 3161364 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 4481241 38827965 ~ 38837594 (-)
G58333 NA other upstream 150943 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 658033 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 1170309 44501787 ~ 44512249 (-)
G58584 NA other upstream 1210416 44541894 ~ 44542809 (-)
G58589 NA other upstream 1234591 44566069 ~ 44566834 (-)

Expression


Co-expression Network