AMCG00009652


Basic Information

Item Value
gene id AMCG00009652
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43605673 ~ 43644666 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009652
ATGGCTGTGGTCATTGAGATACGCAGTCTGATCTTCCTGAGCAGACACCCCTGGACGATGTCAGATGAGGTTGTCTACGCCACTGTCAGATTTGCGTCGTCAGGGGCAACAGCTGGAAAAGATTCTGAAAATGGTGCAGGCACAGCAAAGGGGCAGGCAGATGACTGTCTCCGCCCCAGTAACCCAGgcATCAAAGCAGCTCCCACCCCAGAGCTCAAGGCGAACAGTAAAGCGCCACCTTACAAGTGGCTGACTGTTGTCCTGACAATTCTGGTCCTGTCTGTCATCATGGCTCTGGGAACCAAAATCTTCATCAAGCTGGAGAACACCAGGGAACTGATATCGGTGATGGTGCGCTTCAGTGACTGGCATGGCCACCTGCAGAACCTGGCACACAAAGAGAGTCCTACAGTAGACCTTAGTGTTCCAGTGCAGATACGCAGTCTGATCTTCCTGAGCAGACACCCCAGAAGGATGTCAGACGAGGTTGTTTACGCTACTGTCAGATTTGCGTCATCGGGGGCAACGGCAGCTGAAAATGGCTCAGGCGCAGCAAAGGGGCAGGCAGACAAGTCTCTCCGCTCCAGCAACCCAGGAGTCAAAGCAGCTCCCACTCCAGAGCTCAAGGGGAACGGTAAAGCGCCACCTTACAAGTGGTTGACCGTTGTCCTGACCATTCTGGTCCTGTCTGTCACCACGGCTCTGGGAGTCTGTTATGCCGAAAAAGGGGGTGATTATGAAATCCTGAAATCCAAGTTCATCAATCTCTCTTTGCATATGAATGCAACAGAGAACCGATATAGGGACCTGAATACAACGTACAGCAACCTTTCTGGTGTTTATAATGCTCTGGTCAAGAAACCTCCCGAAAACAAAGTTTGTAATGTCTGTTCTGTGGGCTGGGTGTACAGCAATGGATCGTGCTACTTCTTCTCCACTGATTCAATGAATTGGACTAACAGTCGTGATGACTGTGTCAGAAAGGGGGGGCACCTGGTCATTATAGAGAGTAAGGAGGAGCAGATACTGGCTCAAGAGAACCGGTCAGCCCAGCGAACCTGA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009652 True 1062 mRNA 0.51 12 43605673 43644666

Neighbor

gene id symbol gene type direction distance location
AMCG00009650 NA coding downstream 83536 43512445 ~ 43522137 (-)
AMCG00009651 porcn,LOC106567241 coding downstream 149786 43444573 ~ 43455887 (-)
AMCG00009649 NA coding downstream 166452 43434412 ~ 43439221 (-)
AMCG00009648 wdr13,LOC107584863,LOC107552201 coding downstream 174118 43423905 ~ 43431555 (-)
AMCG00009642 NA coding downstream 232402 43345226 ~ 43373271 (-)
AMCG00009657 NA coding upstream 82540 43727206 ~ 43731531 (-)
AMCG00009665 NA coding upstream 247784 43892450 ~ 43895658 (-)
AMCG00009663 NA coding upstream 257629 43902295 ~ 43918770 (-)
AMCG00009666 LOC105890655,LOC108438067,LOC106566835,LOC106572042,LOC105026930,LOC107558917 coding upstream 279755 43924421 ~ 43930718 (-)
AMCG00009664 NA coding upstream 288561 43933227 ~ 43935758 (-)
G58336 NA non-coding downstream 37011 43531435 ~ 43568662 (-)
G58277 NA non-coding downstream 129585 43475833 ~ 43476088 (-)
G58246 NA non-coding downstream 217755 43387183 ~ 43387918 (-)
G58149 NA non-coding downstream 595560 43006601 ~ 43010113 (-)
G58039 NA non-coding downstream 908540 42696897 ~ 42697133 (-)
G58374 NA non-coding upstream 225688 43870354 ~ 43871117 (-)
G58377 NA non-coding upstream 229115 43873781 ~ 43875739 (-)
G58391 NA non-coding upstream 294255 43938921 ~ 43947522 (-)
G58394 NA non-coding upstream 327598 43972264 ~ 43972630 (-)
G58395 NA non-coding upstream 332619 43977285 ~ 43977486 (-)
G58025 NA other downstream 931966 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 1549545 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 1778739 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 3448202 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 4768079 38827965 ~ 38837594 (-)
AMCG00009672 NA other upstream 344845 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 857121 44501787 ~ 44512249 (-)
G58584 NA other upstream 897228 44541894 ~ 44542809 (-)
G58589 NA other upstream 921403 44566069 ~ 44566834 (-)
G58653 NA other upstream 1138252 44782918 ~ 44785134 (-)

Expression


Co-expression Network