Fish Transcriptome and Expression Database

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model fish

XLOC_006037 (CU640488.1)

Basic Information

Item	Value
gene id	XLOC_006037
gene name	CU640488.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	28740235 ~ 28740369 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011911
AGCCTTTATGTGTTGCCTGTTCATTTCCTTTTCAGAATGAACATGGTGTCAGAAAAGGCGCACATTAACTCTTATTGTGATCTTAAATGGTTGTCAAAGTACTTCCGTTAAATAAGCTCAACAATAAGAACATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080647

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00011911	True	135	snoRNA	0.36	1	28740235	28740369

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006035	polr1c	coding	upstream	45311	28690355 ~ 28694924 (+)
XLOC_006034	inaa	coding	upstream	59199	28675686 ~ 28681036 (+)
XLOC_006033	cnnm2a	coding	upstream	96975	28618086 ~ 28643260 (+)
XLOC_006032	borcs7	coding	upstream	124342	28612313 ~ 28615893 (+)
XLOC_006031	wbp1la	coding	upstream	143470	28580357 ~ 28596765 (+)
XLOC_006038	nsmce4a	coding	downstream	45445	28785814 ~ 28796637 (+)
XLOC_006039	NA	coding	downstream	67723	28808092 ~ 28817882 (+)
XLOC_006040	CU639469.1	coding	downstream	79399	28819768 ~ 28902920 (+)
XLOC_006041	ly6pge	coding	downstream	163590	28903959 ~ 28914437 (+)
XLOC_006042	NA	coding	downstream	175169	28915538 ~ 29097526 (+)
XLOC_006030	NA	non-coding	upstream	172749	28565179 ~ 28567486 (+)
XLOC_006027	NA	non-coding	upstream	256829	28475601 ~ 28483406 (+)
XLOC_006025	CR762431.1	non-coding	upstream	325676	28406913 ~ 28414559 (+)
XLOC_006024	NA	non-coding	upstream	457912	28264236 ~ 28282323 (+)
XLOC_006022	dre-mir-30e-2	non-coding	upstream	945026	27795130 ~ 27795209 (+)
XLOC_006043	CU639469.2	non-coding	downstream	184477	28924846 ~ 28924965 (+)
XLOC_006044	NA	non-coding	downstream	342718	29083087 ~ 29083291 (+)
XLOC_006049	NA	non-coding	downstream	706448	29446817 ~ 29449721 (+)
XLOC_006021	NA	non-coding	upstream	934355	27785094 ~ 27805880 (+)

Expression

Co-expression Network