AMCG00009666 (LOC105890655,LOC108438067,LOC106566835,LOC106572042,LOC105026930,LOC107558917)


Basic Information

Item Value
gene id AMCG00009666
gene name LOC105890655,LOC108438067,LOC106566835,LOC106572042,LOC105026930,LOC107558917
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43924421 ~ 43930718 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009666
CGTCACACTTCTCCCTGTCACGAACAAGAGGAAGGTGACCTGCCGGCCGTGCCAGCGAACCTCCGTGCGTCACTCACGCCATCCGGGCGTCCCTATTGGCCGCAGCCGCGCCAGGGGGCGGGGAGTATCGGCGTGGCAGCAACGAAGGGGCGGGGCCTCGGAGTCggacaggaaaagaaaaaggaaaaaggagagACGGAGGCAGACAAACAAACGCGAGAGACCCGACAGCAGCGCGACTCGCTCCGCGGCCGGGGGGAGACGCGGAAAAGTTGGCGGCGCCTCCATACACGCCCGGGCGCCGGCATCTCCCCAATGGCTGCGATACGTAAGAAGCTGGTGATCGTGGGCGATGGAGCCTGTGGAAAGACCTGTCTGCTCATTGTCTTCAGCAAGGACCAGTTCCCCGAGGTCTATGTGCCCACTGTCTTCGAGAACTACGTGGCTGACATCGAGGTGGACGGCAAGCAGGTTGAACTGGCCCTGTGGGACACAGCTGGACAAGAAGACTATGACCGGCTGCGGCCCCTGTCCTACCCCGACACTGATGTCATCCTCATGTGCTTCTCCATCGACAGCCCCGACAGTCTGGAAAACATCCCTGAGAAGTGGACTCCCGAGGTGAAGCACTTCTGCCCCAATGTGCCCATCATCCTGGTGGGCAACAAGAAGGACCTTCGCAATGACGACCACACACGCCGTGAGCTGGCCAAGATGAaacagGAGCCCGTGAAGCCAGAGGAAGGTAGAGACATGGCAAACCGCATCAACGCCTTTGGATACCTGGAGTGCTCGGCCAAGACGAAGGACGGGGTGCGGGAGGTGTTCGAGATGGCCACCAGGGCGGCGCTGCAGGCCAAGAAACGAGGAAAGAAGAACGCCTGCCTCTTAGGAGcgcgcgagagagagaaagcgaaaaagaaaaaaagagagagagaaaaccagGCCAAGGAAAATGTACCAACAAGTTCCCCACCCCCCGACTCCATCCCGCTCCCTCTCCCAGAAACCCCTTCTCACGCCAAAACAACGGGAATCCCTCTCCTGAGAACCGCCTGCCTCACACCGACTCTGACCCTCGCCCCCCGCTCGCCCCCCCATGCCCCTTTAATTGACATTGACCTACAGGCAGGCAGGAAACGGGAGGAGGAGCGGCTTGGTCTTCtgcaggggtggggggtcttCCTCTAT

Function

NR:

description
PREDICTED: transforming protein RhoA-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009666 True 1191 mRNA 0.60 7 43924421 43930718

Neighbor

gene id symbol gene type direction distance location
AMCG00009663 NA coding downstream 5651 43902295 ~ 43918770 (-)
AMCG00009665 NA coding downstream 28763 43892450 ~ 43895658 (-)
AMCG00009657 NA coding downstream 192890 43727206 ~ 43731531 (-)
AMCG00009652 NA coding downstream 279755 43605673 ~ 43644666 (-)
AMCG00009650 NA coding downstream 402284 43512445 ~ 43522137 (-)
AMCG00009664 NA coding upstream 2509 43933227 ~ 43935758 (-)
AMCG00009671 NA coding upstream 65994 43996712 ~ 44006803 (-)
AMCG00009677 NA coding upstream 120692 44051410 ~ 44064467 (-)
AMCG00009678 NA coding upstream 143132 44073850 ~ 44074116 (-)
AMCG00009683 NA coding upstream 325697 44256415 ~ 44264122 (-)
G58377 NA non-coding downstream 48682 43873781 ~ 43875739 (-)
G58374 NA non-coding downstream 53304 43870354 ~ 43871117 (-)
G58336 NA non-coding downstream 355759 43531435 ~ 43568662 (-)
G58277 NA non-coding downstream 448333 43475833 ~ 43476088 (-)
G58246 NA non-coding downstream 536503 43387183 ~ 43387918 (-)
G58391 NA non-coding upstream 8203 43938921 ~ 43947522 (-)
G58394 NA non-coding upstream 41546 43972264 ~ 43972630 (-)
G58395 NA non-coding upstream 46567 43977285 ~ 43977486 (-)
G58452 NA non-coding upstream 166558 44097276 ~ 44104710 (-)
G58456 NA non-coding upstream 178618 44109336 ~ 44109715 (-)
G58025 NA other downstream 1250714 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 1868293 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2097487 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 3766950 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 5086827 38827965 ~ 38837594 (-)
AMCG00009672 NA other upstream 58793 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 571069 44501787 ~ 44512249 (-)
G58584 NA other upstream 611176 44541894 ~ 44542809 (-)
G58589 NA other upstream 635351 44566069 ~ 44566834 (-)
G58653 NA other upstream 852200 44782918 ~ 44785134 (-)

Expression


Co-expression Network