AMCG00009680


Basic Information

Item Value
gene id AMCG00009680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44265059 ~ 44281187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009680
GTAACGCCTTGAGGTTTGGAGAGAGGAAAAGACTGCCCCTTTCAGCCcgagaattaaatatataaatatatatgtatatacccGCACCTTGATCTCGTCCCACAACAACATCCTCTGTCTGAGGCTCACAGATCTCTGTCCATCGCCTGCGCCGGGTCTGTGAGAGCTGCGCagcgcacgcacgcacgcattGCTGCACCGAGTGCGCCGGGGACTTGCGGGACTGGACGGCGGGGACATCCACCAAGAATGGGAGACATGCAGAAAATTAGACTCCTATGGCTCGTCTTGCTGTCCCTCACGACGTTATCACGGATGGGATTCGCCGAGGAATACAGAGCCCGTCTCCTAAGGTCGCCGAATAACGGAGGCGCCGGTGTGTACCTGCAGCGAATGAAACGTCAAACCAGTCAACCGAAACCAGAGTTGAAGCTCACGGAGTTCCACGTGCGATCTACGGTCGTGTCCCGCTACGCCCGGACCACGGTGGAGAGTACAGTGTGGAACCAGCTTCCTGTCCACAGAGAGGCTGCTTTTGAAGTGGATCTTCCCAATACAGCATTCATTTCCAACTTCACCATagagagggagacggagaaGTTCCGGGTGGCTGTCAGCGTACCGGCTGGCACTCAAATGACCTTCACCCTGACCTatgaggagctgctgcagaggcggCTGGGCCACTACGAGCTGGCTCTGAGCGTCAGGCCTGGGCAGCCGGTGCACAACCTCACCGTGGAGGTCACCATCTCGGAGAGGACGGGCATCAGCTTCCTGCGCGTGCTGCCCCTGCGTACCAACAAGCTGCTGACCAACACCGTGCGAGGTGAGGGAGTCTGGGGGCACAATGCCAACTGCGCCCGTGTCCGATTCACCCCCACTGTGCAGGAGCAGGGCGCCGCCTCCCCGAAGGGCATCGCGGCCGACTTTGTAGTGCAGTACGACGTGGAGCTCAGCGATCTCATTGGGGATGTGCAGGCAAGAACATTAATGCACTACTGGGGTGGGCGGGGGTTCAGTGAGGTTGAAGAGATGCATGCAATTTATGACGGCTACTTTGTTCACTACTTTGCTCCTCGAGGTCTGCCCATCGTTCCCAAGGACGTCATCTTCGTGATCGACATCAGCGGCTCCATGGTGGGGACGAAGATAAAGCAGACCAAGCAGGCCATGACCACCATCCTGGGCGACCTGCGAGAGAGTGACTACTTCAACATCATCACCTTCTCTGACTCCATCAAGAGGTGGAAAACTGCCGGTACCATCAAAGCCAGCGCTCAGAACGTGAAAGATGCCAAGGAATTTGTGAAGAAGATCAACGCAGACGGATGGACGGACATCAACGCGGCTCTGCTCAGCGCTGCTCAGCTGGTCAATGCCAATACAGCCACAGAAGGCAAAGCCAGCAACCGTGTCCCCCTCATCATCTTCCTGACGGACGGGGAGCCCACTACCGGGGTCACGTCCACAACCAAGATCATCCAGAACGCCAAGGAGGCCCTGGGCTCGGCCTGTCTCTTTGGCCTGGCCTTCGGGGATGACGCAGACTTTTCCCTCATGCGGAGGCTGTCCATGGAGAACCGGGGAGTGGCACGCATGATCTACGAGGACGCAGACGCCGCCTTGCAGCTGAAGGGCTTTTACGACGAGGTCGCCAGTCCCTTGCTCTTCGACATCCAGCTCAACTACATGGACAACCATGTCTACGATGTTACCCAGGCCCTTTTCCCCAACTATTTCCAAGGCTCAGAGCTGGTGGTGGCCGGGCGGGTCAAGCCTGGGGTAAAGGACCTCAGGGTCACGTTGACAGCCACAGATTCCCAGAAGCAGCTGTCTGTGGAGAATGACGTGGCTGTCCAGGACTCAGGCAACGCAACCTTCGGGTGCCCCGGAGAGCTTGGGGGCATCTCCAGCTTTGTCCGCCGCTTGTGGGCCTACTTCACAATCAAGGAGCTCCTCGAAGCCAAATTGAACACCACAGATCCAGCCACCCAGCGCATCCTGACAGAGAAGGCCACCAACCTCTCGCTGAAGTACAACTTTGTCACTCCCGTCACTTCCCTGGTGGTGGTCAAGCCAGAGGAGACACCCACAAACACTACCACCACCAGCAGTACCACCACCagcactaccaccaccaccagcaccaccacaacaaccaCCACGACCACCACTGCTCTACCGATCCTCAAGACAAGTATGGTCGCCCACGCCGCCACCACCCCCCAACTTCCCCTTAAAACATCTCCCACCACCAGCGCCCAAAAAAACCTATCCACCCCCAGGACTAGCAAACCCAAGGCCAAGCCCCCCAGCCTCCACACCACCAGCCACCCCTCCATGCTCCTCCAGACTtcctctcccttcccaggcaaaGGGCTCGCCCATCCTGAATCTGAGAACATCACCTCCGCCCCCGAGGGCCGTCTCACCCCCCGCCTCGCCACCGTCGCCTCCTCCAGCCACACAGATGCACCCCGGGCCCCCTCTACGAACCCGCCGCCGCCCCCCCTGGGCACCACAGAGCCGTCCCCCAACACTGAGGTGGCCATTGATATTGAAATGGCCACTGTGATGGAGGACACTTTAATGCCCATGCTAACGAGCCTAGACCTAGAAGTGGAGGCGACCGCTGACTTAGTGGGTCACTATGATATTGGTTATGATGATTACATCGAGGGAGGACAAGATGCTGACTatGTGGACACCGCAAACCTCCTAACAGGTCACTATGATATTGGTTATGATGAATACATCGAGGGAGGACAAGATGCTGACTCGAATTTGCAAATTGCTGATGGAGACCCCCATTTTGTGGTCCACCTGCCCAGACTAGGGGAGAATATCTGCTTCACTATTGACGGGGAGCCCAATGACGTTCTCAGGCTGGTCGATGACCCAGTGAGAGGCATAATTGTGGATGGACATTTAATGTGGGCCCCTTCCAAAGTAGGCTTTGAAGACCATTCCAGGACTTACTTCGATCAGCTGATCTTCTCCATGGAGATGGAAGGGGCAGGGCCCTGGGTAGTCACGGTATCCCTGACCTCCATCGTCCTGGAGGGTGAGGATCGGGTTATGCTGCCCGTTGATAAGCCGGGCTCCGTCAAGAGGCGGGATGTGAAGATCCAAGTGGACGATCAGCTGCGAGCCTGGGTGATGTTAAGGCGGGACCTCCAGTTCTTGGTTCTCTTCCATCACTACCAGCACCCCACCTACCTGCAGCTCAGCCATCTTGGGATCTACATCGCCAGTGGACAAGGTTTATCCCCACGCACGAAAGGCTTATTaggCCAGTTCCAGCATGCAGAGATCGATATCGTGAGAAGCAAAGATGCCACAGGCTCCTCCGAAGCCAACGGGCAGGAGAAAGCAACCACAGGAGAGCTGAGGTGGCGTGGGGAGAAGATCCCAGTCCTCCTGCAAACCAAAAGCCTGAAAGATACGGTGCAGAAGAGGCACCCGGGCAACTGCTGGCTGGTCATTAAAGCGCAAGTGGAGCGGCTGGTCAACGGCACCTACCGCGACTATGTCGTTGGCCACAACTGAGTAGCGACCTTCTTGTTTTAGGTGCTTCAAAGGACAATCAAGCATTCCAACTTGGCTTGGCTTTAGGACCTGTCTGCACCAACGGATGCCACCACCCTACTCCAATccacccctcccctcctccttctTGCTTTCACTTCTCCATTACTACAAGATTTAGGAGtttcctatatattttttttcgtAAATTTGGATTCAGACCTTTTGTAGACAATTCTGGGCTAAGCTAAGCTATCTGTAAAGAAGTTATGAAAGCCCTAAAATCTTCTAAGCTGAAGTGGATGGGAGAGTCTGGGTCTCACTGTTAGTCACCAAAGGCTCTTGGGAGATGTTGAAGGCGCTGTACCCTTCGGAGTTGTTCATGAACACACTTTCCACACTTGTCAAAGCGAAAGGCCATGAACTCGGCCAATATAAGCAGaggaataaaaagaaacagtaaTGGTGTCTGTGAAATGATTAgggaaataaaactgaaaataatacagatgCTGTGAACGTCTGGTTTTATCTTTCAAGATAGGATACCCAGAAGCAGACCTCACCATGACACCCATAACAGATTACGATCACTACCTGTGATTGAGGCCAACTGcacagatatctttaaataactgAATCTGGTAAAGGTAATTGGGAACAAATGCCTGAATACCCATAATCCTTCAAGGGCCAGAGTTCCCATAAATCACCTGGCATTGATCAATAATTAACACATTCCCAGTCTTTTGGAATTGAGGACCTATAAGCCTACCTGGATAGGGGGGGGTCTTGGAGAGCGCGGTTGGAGAGCGCGGTTGGAGACTGCTTGTCCAGCAGTTTCAAGCGACATCACGGCGGTTTCAAAGACCCACTAAGGTCTCACTCAACGTGAATCTTGAAAAGCTGTACAACTGACATTCAACTTACTGGTTTCACTACAGGCCTGGCCAACTTCATAAGCACCATGTACCCATCCCTGTAACATCACTTTTCCTAAACACCAGGGATGTGTAACCTatcttaattattaatgtaaaaaaatatatatattttcatccaCTGGCTTTCTAAagttttgtaaattaatgttttattcacaATGCATCAAGTGAGCGGAAAtgggtttgtgttgttttaatagtgtgtaaaatgactgaaaatatgTCTGACTTGAGGGTCAAAAACCTTCTTCACATTGTAAAAGTGTTTTGTATATAATATGCCCTTCATACATAATACAATGGTTGTATTTAAA

Function

GO: NA

KEGG:

id description
K24516 ITIH6; inter-alpha-trypsin inhibitor heavy chain H6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009680 True 4789 mRNA 0.53 15 44265059 44281187

Neighbor

gene id symbol gene type direction distance location
AMCG00009682 si:dkey-96f10.1,LOC106609077,LOC108427753,LOC105900165,LOC108276060,LOC107704228 coding upstream 11012 44235551 ~ 44254047 (+)
AMCG00009684 NA coding upstream 42846 44221359 ~ 44222213 (+)
AMCG00009681 NA coding upstream 59805 44199516 ~ 44205254 (+)
AMCG00009679 NA coding upstream 103820 44160582 ~ 44161239 (+)
AMCG00009673 NA coding upstream 122905 44128283 ~ 44142154 (+)
AMCG00009687 NA coding downstream 22039 44303226 ~ 44314149 (+)
AMCG00009686 taz coding downstream 33785 44314972 ~ 44322797 (+)
AMCG00009685 NA coding downstream 83344 44364531 ~ 44372415 (+)
AMCG00009688 NA coding downstream 92514 44373701 ~ 44381036 (+)
AMCG00009689 NA coding downstream 101370 44382557 ~ 44386172 (+)
G58467 NA non-coding upstream 95270 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 338428 43921474 ~ 43926631 (+)
G58317 NA non-coding upstream 349299 43909588 ~ 43915760 (+)
G58304 NA non-coding upstream 389336 43873781 ~ 43875723 (+)
G58291 NA non-coding upstream 584106 43678351 ~ 43680953 (+)
G58510 NA non-coding downstream 43964 44325151 ~ 44325573 (+)
G58513 NA non-coding downstream 47084 44328271 ~ 44360062 (+)
G58527 NA non-coding downstream 132085 44413272 ~ 44483247 (+)
G58666 NA non-coding downstream 611658 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 636856 44918043 ~ 44921637 (+)
G58324 NA other upstream 329297 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 820639 43436990 ~ 43444420 (+)
G57830 NA other upstream 2186818 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2665935 41596229 ~ 41599124 (+)
G57604 NA other upstream 3270400 40990802 ~ 40994659 (+)
G58522 NA other downstream 105310 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 280590 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 303375 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 351563 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 468989 44750176 ~ 44760058 (+)

Expression


Co-expression Network