AMCG00009688


Basic Information

Item Value
gene id AMCG00009688
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44373701 ~ 44381036 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009688
CCTTGCTGTAAAAGCCACAGGAAACTCAGCTGCTCTCATCATGACGCTGGAGGAAGTGAGCGGGCTGGACTTCGCCTGTCCGGAATCCCTTTTGATCTGCTGAGCTGGGGAGGAGTTCAAAAGTGCCTTCTACAGCGGGAAGAGTCTCACCATGAAGTCCTCGGGTCTGctcctgtgtctctgtctcctgGAGGCAGCGTCGGCCTTTAAGATCTGTGCCTTCAACGCACAACACTTCGGCAACTCCAAGGCCGCCAACGCCAAAGTGATGTCCACTATTGTCAGGATCATCTCGCGCTGTGATGTGTGTCTCATACAAGAGGTGCACGACCAAAAGGGCCGGGCCGTGACAGCGCTGATCAATGCCCTGAACAGGAACAACAAAGACAAGTACGAATACCTGGCGAGCGAACGCCTGGGCAGGAATTCGTACCAGGAGCAGTATGTCTTTGTGTTCAGGTCTGATCGATTGAAAGTCAAGGACAAATACCAGTATCCTGACCAGCAGAAGGGCGACATCGATGCTTTTTCCCGGGAGCCCTTTGTCGTGCGTTTCGAGGCTCCACACACCGCGATTAAAGACCTGGTCCTCATTCCCCAGCACACCAGCCCCTCCAACGCCACCAAGGAGATCGACGAGCTCTACGATGTCTTTCAGGAAGTGAAGCGGCTCTGGAGGATCGATAATGCCATGTTTCTGGGAGATTTCAACGCGGCCTGCGGCTACGTCGCCAAAAAGAACTGGAAGACTATCCGCCTGTACTCTGAGCCGGGCTTCACCTGGCTGATCGACCACAAGACAGACACCACGGTCCGCCAGACCACAGAGTGTGCGATTGTGGTTCACGGAGATGCCTTGCTCAGGGGTATTGTTCCTCAGTCAGCCAAGCCTTTCAACTTTGCCGCTGCGTTCGGCCTCACAGAAGAGGAGGCTCTGGAAGTGAGCGACCATTACCCTGTCGAAGTGGAGCTGAAGGTGGTGCAGCAGAGGGGCCGCTTTGGATCTTCAGGGTCCCAAATCCACTGCTCCCTCAGTCTCCTCACAgccctctccctcttctccttCACTTGCGGCCCACGTCTTTCTCTGTGGCTAATTCTTGCCCAGGCCCTGAAGACCATCCACTCTGCCTGTGGACCAGAGAAGACCCTGTCACGGACGCCAAGCCTTCCTCAGGGGAACGCCGCATTCAGCCAAGGTTTTAGACTGCCATGGGCCAGGATCTTGGCTTGGGACATCCAGAATCAGGCCTGTCCTGTTTTCGCTTGTGCCCTGGAGGTGAGCGACCACTACCCGGTGGAAGTGGAGCTGAAGGAGGTGAGGGCGAGCGGTCGGGGGCTACTGCTGTCTTCTTACGCCAAGCAGGCTCTGGGGCTTCCCGCTCCGACCGCCCGCGCTGTTGTtcccacacacaacacaacggCCATTTAAGCAAAAGCTCCGCGCACTTATTGTGTCTTCTGCGCCGGAGACGGGTGCGGGGAATTCAGGTGTTTGTTCCCAATGATCTCAAAATGACCCAAAAAACGCTACCAGCTGAACGGATCGGAATCAGAAACCAGTCATCCATTTGTGCATCGTTGCCTAGAGAGTGttcccaaattaattaaattaatctcatGCTGTTTTTCATCAGTTCATCAGTTTTCATCCGTTCACTGATGTTCTGTGTTATAAAACGTTTGTCCAATAGATACATTTCAAACCACACCTGTCCCCAAACTACAAATCAAGCACCACTACCACAGATCAGTGGAGGGGTTTAACTGGACTCCCAGACTTCTAACTGTATACcattcattgttgttgttttggtgcCATGATAAATCTTATTCAagtgtatttaatgtgtatattttttgtcttgGAACCATATGCAGTTAAATAGTTCTGCcttctgtgaaaatgtctgatCCACAGTCGAGCAACGTTGCTAAAACCTGCTGCAGGGTGTTTGTGTACTGTTGCGTGTCACTGAATGCCCTTGTTTCCGTTGGGGAACTTGCATGTTAAGTGTATATTGTTATCTCCCTTCTATACTCGAATGCCAAGGAGCAGCCGTGTATTGTGTGTTCTTATTATCACCTATACATTGTACCCCTGGGTATAGCGGCTcctgtttatttgaatgttgGCACAATTGAAACTCTCTGTGTGTCAACAGAGCTTTTGACTGTTAAATTATTGCACGCAAAAGCTGAACAGTGAGGCTGTCCGGCCAACATTTTGGAAACCTCTCATAATTGTAATTGCACATTTTGCCTAAAAACActttgtactgtatataataaagtgtgtgtattatttagCATGTCTGATTGTGTTTAGAGGTTGGTACCAGTATATTGTAAGATGTTgccaatataaaacataatttttgtcAGTATTAATCAAACGTTCTTCGATAATTTGTGTTCAGGGGtccttattttattaagaaacaaaagctGAAGTATGTGACTGTGTTTTAGGTGTGgagatgataataataagatgtttattaaaaacCTGTTTTGTATCTGccaatgctttttaaaacaacaggTTAAGTCTGGATGTATCTGTTACACATCCTTTCTAAGCATTATGTCAAACCAAGACCAAGCCTATCAAATGTCAAG

Function

GO: NA

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009688 True 2622 mRNA 0.48 11 44373701 44381036

Neighbor

gene id symbol gene type direction distance location
AMCG00009685 NA coding upstream 1286 44364531 ~ 44372415 (+)
AMCG00009686 taz coding upstream 50904 44314972 ~ 44322797 (+)
AMCG00009687 NA coding upstream 59552 44303226 ~ 44314149 (+)
AMCG00009680 NA coding upstream 92514 44265059 ~ 44281187 (+)
AMCG00009682 si:dkey-96f10.1,LOC106609077,LOC108427753,LOC105900165,LOC108276060,LOC107704228 coding upstream 119654 44235551 ~ 44254047 (+)
AMCG00009689 NA coding downstream 1521 44382557 ~ 44386172 (+)
AMCG00009698 NA coding downstream 58538 44439574 ~ 44442056 (+)
AMCG00009696 flna,LOC108436314,LOC107712729,LOC101154674,LOC107570276 coding downstream 69067 44450103 ~ 44482061 (+)
AMCG00009695 NA coding downstream 102931 44483967 ~ 44490079 (+)
AMCG00009699 NA coding downstream 111659 44492695 ~ 44502439 (+)
G58513 NA non-coding upstream 13639 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 48128 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 203912 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 447070 43921474 ~ 43926631 (+)
G58317 NA non-coding upstream 457941 43909588 ~ 43915760 (+)
G58527 NA non-coding downstream 32236 44413272 ~ 44483247 (+)
G58666 NA non-coding downstream 511809 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 537007 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 541048 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 762139 45143175 ~ 45143472 (+)
G58324 NA other upstream 437939 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 929281 43436990 ~ 43444420 (+)
G57830 NA other upstream 2295460 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2774577 41596229 ~ 41599124 (+)
G57604 NA other upstream 3379042 40990802 ~ 40994659 (+)
G58522 NA other downstream 5461 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 180741 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 203526 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 251714 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 369140 44750176 ~ 44760058 (+)

Expression


Co-expression Network