AMCG00009691


Basic Information

Item Value
gene id AMCG00009691
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44346470 ~ 44354753 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009691
TGCCAAATCAGTCCCATTTAAAGGAAGCTCCAGTGAGAGTCACAGTCCATCTTGGGAGCTCAGCTGCTCTGCTCAGAACTCAATGAAGCTGCAGGAGACGCCACACAAACCGGCAGAGGGGAACCGCCCTGTAGCCCAGACCAGAGAAGCAGGCGAGATGTATCTGTACCGGGTGAAGATGATCTCGCTGGCCGTTCTCTGTATCCTACTGGGCACTTATGTGATGTTTCTGAAATACCACAAGGACAGATGCAGTGAACTGAGAGATGAGAACAGGAACCTGTCTGAGACACTCGCTGCTCTGAAACAATATCAAGACCTTCATACCAGAGACTGTAAACTCTGTCCTGTGGGCTGGGAGCTCAACGATGGAAAGTGCTACTTCTTCTCCACTGATGGAAAGAACTGGGATGAGAGTCATGATGACTGTGTCAGAAAGGGGGGACACTTGGTCATTATAGGCACTGAGGATGAGCAGAGattcttaaaaaggaaaattgaCAATGTGGCAGGAAACAATTACTGGATTGGACTGACTGATGCAGCTGCTGAAGGAGTCTGGCGCTGGGTGGACAACACACCTCTCGGGGATCTCATATTCTGGGCCACAAAAAAGATACGTAAAGATGAGCCTGATAACTGGACAGGAGAAAATCCTTTAGGGGAGGACTGTGCATGTTTGAACTCATTAACAGAACCATTACATAACTGGTTTGATGAATCTTGCACCAACGCTTTGAGACGAatctgtgaaacaaaaacactggaaaaaCCCAACTAACAAGaaacaatacatgtttatttttttaataggagTGTCTTAAACTGTCCTAAGCACACAGTCACTCCAGTCAGTAGTAGTATTTTAGAAATCCAGTGTTTCGAGGCGCAGGTTTGCTGTGTTGCCACTAGTTTATTTAGACCCCCATGTGAAGAGACTCAGAGCGACAGGAAGGCAGGGCACTGAGGACGATCAATCAGCCCCCAGATTACTGCTCCTCTTGGCCGACTGTTCAGCTCTCTATACAGCTTTCAGTGAAGCCAACAGCTACTGTGCTGTCTTACTTTACTATCTAAGACAATCCAATCTTTATTGATCTCTGTAAATGATAGTACTATACATTACACCACAAACTACACTCAAATGATTTAGAATGCTTATGAAACCCAACTTTGAATCTGTTAATGTCTCACTGAAGATTAATTGTTACAAGAGTATAATTTGGATGACTGTATGAAATGATGccattaaatgtttctgttgctTGA

Function

GO: NA

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009691 True 1269 mRNA 0.44 6 44346470 44354753

Neighbor

gene id symbol gene type direction distance location
AMCG00009692 NA coding downstream 4179 44339063 ~ 44342291 (-)
AMCG00009693 NA coding downstream 18116 44323985 ~ 44328354 (-)
AMCG00009690 gdi1,LOC105013583,LOC106567106,LOC106572620 coding downstream 53352 44284878 ~ 44293118 (-)
AMCG00009683 NA coding downstream 82348 44256415 ~ 44264122 (-)
AMCG00009678 NA coding downstream 272354 44073850 ~ 44074116 (-)
AMCG00009704 plxna3,LOC107743094,LOC107601745 coding upstream 299098 44653851 ~ 44654614 (-)
AMCG00009705 NA coding upstream 301291 44656044 ~ 44657724 (-)
AMCG00009710 NA coding upstream 327911 44682664 ~ 44693533 (-)
AMCG00009713 LOC107601746 coding upstream 434377 44789130 ~ 44808487 (-)
AMCG00009718 LOC106566500,LOC105009055,LOC102795717,LOC107584920,LOC107735484 coding upstream 567336 44922089 ~ 44927038 (-)
G58511 NA non-coding downstream 20897 44325157 ~ 44325573 (-)
G58459 NA non-coding downstream 225403 44115650 ~ 44121067 (-)
G58457 NA non-coding downstream 236187 44109969 ~ 44110283 (-)
G58456 NA non-coding downstream 236755 44109336 ~ 44109715 (-)
G58452 NA non-coding downstream 241760 44097276 ~ 44104710 (-)
G58548 flna,LOC107699576 non-coding upstream 126299 44481052 ~ 44526239 (-)
G58585 NA non-coding upstream 188190 44542943 ~ 44543177 (-)
G58605 NA non-coding upstream 303663 44658416 ~ 44659098 (-)
G58611 NA non-coding upstream 307128 44661881 ~ 44662333 (-)
G58612 NA non-coding upstream 309985 44664738 ~ 44664945 (-)
AMCG00009672 NA other downstream 350816 43989511 ~ 43995654 (-)
G58333 NA other downstream 401173 43482421 ~ 43945297 (-)
G58025 NA other downstream 1672763 42648850 ~ 42673707 (-)
AMCG00009582 NA other downstream 2290342 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 2519536 41814559 ~ 41826934 (-)
AMCG00009697 NA other upstream 147034 44501787 ~ 44512249 (-)
G58584 NA other upstream 187141 44541894 ~ 44542809 (-)
G58589 NA other upstream 211316 44566069 ~ 44566834 (-)
G58653 NA other upstream 428165 44782918 ~ 44785134 (-)
AMCG00009739 NA other upstream 814188 45168941 ~ 45230457 (-)

Expression


Co-expression Network