AMCG00009694 (LOC103385381)


Basic Information

Item Value
gene id AMCG00009694
gene name LOC103385381
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44561777 ~ 44570531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009694
GTCTTGAGGAAGAGCCCGCGGACCAAGGGCGGGGGTGCGGGGGTCCCCGGGGGCGGCCCGGGAGCGGGGGGTCCGCCGGGAGGTCCCGGCGTCCTGGACTTCATGGACAGCAGCACCCAGACGGACATCACTTTCCAGCACATCCTGCCCCTGGGCAAGCTGCACCCGTCCTCACCACCCCTGCCACCCCTGCTGGAGCCCTACATCCTGTCTGAGCTGCCTCCTATAGAGCACGACTACTATGACCCCAATGACTACCTGGACAGCTCTCACCACGAGGTGGACCGACAGGACGACCTGGAGTACGAGGAGGTGGAGCTGTACAAGTCCAGCCAGCAGGACAAGCTGGGGCTGACAGTGTGTTACCGCACTGACGACGAGGAGGACCTGGGCATTTACGTGGGCGAGGTGAATCCCAACAGTATTGCAGCCAAGGACGGGCGAATCAGAGAGGGCGACCGGATTCTGCAGATCAATGGCATGGACGTGCAGAACCGAGAGGAGGCGGTGGCCATCCTGACCCGAGAGGACAGCACCAATATCTCCCTGCTGCTGGCCCGGCCAGACATTGAGAACGACAACCGTCTGgagcaggaggagctggaggcgGACCTGGCGGGGATGGGGGTGGAGCTCCTGGACAACGCCGCTCACCTGCCCCCCGAGCTGCGGCACTGCCACCGTGCCGGGGTCGGCGCCGGAGAGAGGGGGTCAGTGAGAGACGCTGCTGGGGGGGGCATCGGCAACggagtgggaggaggaggaggaggacagggagGGGGCGGCGTCCTGCGCTCGACCACGCTGAGCAACAGCCAGGAGCTGGACAGCGGAGTGGGCCGCACGGACGAGAGCACGCGCAACGAGGAGTCGTCCGAGCATGACCTGCTGGGGGACGAGCAGACCAGCGCCTCCAACACCAACGCCACCAACACGCCCGGCAGCCTGCGCAAGTTCCGCTGCGGCCGCGGAGACACCCCCCCGCTGCCCTGCCGCGACTTCCACCTCAGCTCCGACTCGCTGCTGGGCCTGGACTACTGCGGCGGCCTGGCGCTGGAGCGGGGTGGCGGAGGCTATGCGCCGGACCCCGTGCTGCTCATGATGCCGGGCCTGACGGAGGAGGAGTGCGAGCGCTACCGGGAGCTGCTGGAGATCAAGTGCCACTATGAGCAGAACGGCAACACACTGACCGCGCCGCCACCACCGCCGGCTGAGAGGGGCCGGCTGGACGTGAACCGCAACGAGAGCCTGATCCAGCACGAGATGGCactgctggaggaggagctgcgCCACCTGGAGTTCAAGTGCCGCAACATCCTGCGGGCGCAGAAGATGCAGCAACTGCGGGAGCGTTGCATGAAGGCCTGGttgctggaggaggaggcggcggcCGCGGGGGGCGTGGCCGGGGAGCCGCAGAAGCACGAGCTGTCCGACATCACGGAGCTGCCTGAGCGCTCGGACAAGGACAGCACCAGCGCCTACAACACGGGCGGGGAGAGCTGCCGCAGCACGCCGCTGGTGTCCGAGCAGCCGCCCGCGCCGCTGCCCCCACACCTGCCCCTCAGCCCTGGCGccagccccccccccatcccctccccGGGCCCCCTGCCCCGCCCCGGCCAGCACGACAGCCCGGCGCGCCGCGAGAGACACAACCTGAACCGCGCCTACCCCCCCGCGCCCGGCTCCCCCAACGGGAACAGCGGCCGAGCCCGGGGGCTGGAGGAGGGCGGCCGGGGAggcagccccagccccagcaaGTTCCGCTCGCTGTCACAGGAGGGCAGCCGGCGCGGCTCGGAGGGCGAGAGGGCCAAGCGCAGCCCCAAGACCGGGGGAGGCGGCACTCTGGAGCGGGGGGGCGGACGCAGTGCCGAGAACAGCCCCTACTTCTCGCGGCGCCACCGCGGAGCCCGCCTGCCCGAGCGCTACCAGAGCTGCATGCAACTGCGCTCCACCTCGGAGGAGCCCGAGGACGGCGGCGGTGGCGGTGGCGGCACCGGCGGCGGGGGTGACAGCAGCGGCCAGCTCAGCCCCATGAGTCTGGCCAGCAACTGCCGGGAGCCCGAGCCCCTGTCCCCACCGCGCTGCCCCATCCCGCCGCCTCCGCCCCTGCTGCTGCCCCTGCCCTTGCCGCAGCCGCGCATGGAGTGGAAGGTGAAGGTGCGCAGCGACGGCTCCCGCTACGTGGCCAAGCGCCCGGTGCGCGACCGGCTGCTCAAGGCCCGCGCCATGAAGATCAAGGAGGAGCGTAGCGGCATGACCACGGACGACGACGCGGTGAGCGAGATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGCAAGCAGCAGCTGATGCGTGCCCGGGAGCACCGCCGCCGCCGCGAGTTCATGATGCAGAGCCGTCTGGACTGCCTGCGCGAGCGCGAGCAGCGGGAGCACGGGGGCGGCGCCGGCGCCGGGGCGGACGGGGGCCGGGCAGAGGCCAGCATCCTGGAGCTGAGCCACCGCAAGGCCGTGAAGAAGAGGAGCCGCCGCATCCTGGACAACTGGGTCACCATCCAGGAGATGCTGGCCCACGGCACGCGCTCTGCCGATGGCAAGAGGGTCTACAACCCGCTGCTCTCCGTCACCACCGTGTAG
>TU73232
GCCCCATCCCGCCGCCTCCGCCCCTGCTGCTGCCCCTGCCCTTGCCGCAGCCGCGCATGGAGTGGAAGGTGAAGGTGCGCAGCGACGGCTCCCGCTACGTGGCCAAGCGCCCGGTGCGCGACCGGCTGCTCAAGGCCCGCGCCATGAAGATCAAGGAGGAGCGTAGCGGCATGACCACGGACGACGACGCGGTGAGCGAGATGAAGATGGGCCGCTACTGGAGCAAGGAGGAGCGCAAGCAGCAGCTGATGCGTGCCCGGGAGCACCGCCGCCGCCGCGAGTTCATGATGCAGAGCCGTCTGGACTGCCTGCGCGAGCGCGAGCAGCGGGAGCACGGGGGCGGCGCCGGCGCCGGGGCGGACGGGGGCCGGGCAGAGGCCAGCATCCTGGAGCTGAGCCACCGCAAGGCCGTGAAGAAGAGGAGCCGCCGCATCCTGGACAACTGGGTCACCATCCAGGAGATGCTGGCCCACGGCACGCGCTCTGCCGATGGCAAGAGGGTCTACAACCCGCTGCTCTCCGTCACCACCGTGTAGCGGGGCAGGGCGGCAGGGGGGAGATGGAGGGGTGAACGGACGGATCCCTAACCCACCTGAGACATTAATGCTGCACAGGAacagtgagagagcgagagacagagagagagatagagagatgagagatagagacagagagaaagatagagatgagagagacggggagatgAGACTCTCTGGACACCAGGCTGCCGGTCATTGATGTTGGGCGAACAAAAGAGGAAAGGGAAGacaggaaaagagagagggaagagagagaaagagagagaggggatcgGTGCAGCACAGACGCAATACATCACTAGACACCACCCTGTGccgagagaatgagagagatagagggtgAGGGGGGATTGGTGCACACAGATGCAATGCATCAccggaaagagagagagtgagagacacacagatgtAAGAAGGGTCTTGACAGACTCGGGGGGTCGCTGGGGGGTCACAGTGCACCTGCACAGCCCCTCACACAACACTACCCCCACCCACCGTCTCTCTCCTGACGCACACACTGTCGCTCAGTGTTTTCCTACCAGTCCTCCCCTACCTGCCTTTACAACGAGTCAGTTCTTCAGTGTGTGTCTCCGGGTggggctgtgtgttgtgtgcgtgGGGGGTCTGGGTGAGTGACGTTCAAAAAGCACACAAAGTGAATAGGGAATGCACAATACTTTCTGTAATTTTTCtacttgtattatatatataaaactggaCTGGATTCTCGACATCccgggaggaggagagagggacgGGGGGAGACGCACAGGGACagcccccgtctctctctctctctgccgcAGGGCTGCGCGTCTGGTGCGTcagccccctcctcccccacgCGCCGCCTCGccctcagctctctctctctctctctttcctctaaGTGTGGAATCCCCCACTGCCCCTTGGACAGCAGCCCCGTGTCGAGCCCCCGTGTGGAGccacatggagagagagacaccagaccGGACTCTGGACGCCCGCTGTCCGAGCTGAACCAGGGGTGACCCCAGTGCCGCCCTGCTCACCTGCCGGACTGAAGGAGGGGCGGGACTTTTGACAGCTGTCCAAATGTCATGACCTCTCCGCTGCCCATTCCTGCTGAACGTACCGTAGTGCGAACGCAGACGAAATAGCCGTGTTCAGGGGGAGGGGCTTCGTATTGCAAGataataaaatagttataataaggGGTTTGACAAAAGACACAATGCTGCTGGTGCTGCGGAGCCCCGGGCCGGACCGGGACGTTGGGGGACGTGTGACTCCTACCTGGGAGCAGTTTTACtctggttttgtattttaaggaGAACAGAAAAACAGCCGGAAAAATAGAAATCGGTCGAAAGTGGAAGTTACTGAGCCGTGCAGCTGTTTGactgcgtatgtgtgtgtgcgtgtgcgtgtgtgcgtgcgtgtatgcgtgtgtgtgcgtgtgtgttacGGGGCTCACTCTGTGACACGACCCCTCTGAAGGCAGTGTATGAATCTCCCACGTCGGGACACCGTCTGTTTGGCACAGGTTTGTCGCTGTGCTGGGCGGAGGTGTGCGGTGTGTGACAGTATGactgcgcatgtgtgtgtgtcggtaTCCGTGccgtgtccgtgtgtgtgtgtgtccgtgtcctTGAGTGTCAGCCGATGCCATGGTGCTCTGAGGGACAACTGTGTGACGCACAGCTCCCTCTGCCAGCCAAAGCCTGCACCCCGAGGTGAAAGGTTAAAAGCTAAGGTTAATAACCGAAGTCTCCCCCACTCTCCTGTCCCCGCTGTCCTTCCACACGGGGACAATTACACAACTACAGCCATGTGCTCCTTCAGAGGCCCTCCCTACCCTCTTCCGCTCCGTTCTCACGTGGTGCTGTAATCCGCTGTAATCAGGTGTAATCAGGTGTAATCAAGAACAGTCAGCTGTATTTCAGCCTCCTGCTGCCCCTGACATGGACTGTGGAGGCTTTATAATGACACacaagagggggagagagacgggGCAGGGGGCAggttctgacacacacacatgcgctgCGGTCGTTCCCGGGCCTTGGGTCGGGGCGTACAGCTGTAACTGGGCTTGTCTGCCAGGGCAATTGTCCTCCACCACACTGTTGTACATTTTCTACTGGATGGCTGTGGCGGCGCCGATGTCAGCCGTGAGATTCTCCAGAAAGGTCCAGTCGAGTTGGACCGGGTCATGGTAGGGAACGAAGGGTCCGCTTCCTTACTTTTAATGAATATTAGTTTAAGTATCGAGTGCTTGGGGTGATTGGCGGGGCGAGTGACGGACGCTCCCCCGGATGACGGCTGCGGCTCGTTCTGTACATTCTCTGCATGGTGttcaaaagaaatgtaaagaaattcaacatgaaaacagaaaaaagtgtttaaacaaTACTGATTTTGAAGCTCCGGGGCGGTAGCGGCCGAGGAGCGCGTAGTCCCTGTGTTGGTGATCTTTCTAGGTGTTTCCGTGtcctgtttctttgttttagatttgcataaagttgaaaaacacaaaaaagaaagaaaaagaaaaaaaaaagctttggcGTGCATCTGTGTGTTCACTGTACTGTTCTCTGTCCTGGTCCcgggatttgttttaaatcaataaacgACCTGTTT

Function

NR:

description
PREDICTED: PDZ domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009694 False 2628 mRNA 0.70 6 44561777 44567900
TU73232 True 3167 TUCP 0.57 1 44567365 44570531

Neighbor

gene id symbol gene type direction distance location
AMCG00009699 NA coding upstream 59338 44492695 ~ 44502439 (+)
AMCG00009695 NA coding upstream 71698 44483967 ~ 44490079 (+)
AMCG00009696 flna,LOC108436314,LOC107712729,LOC101154674,LOC107570276 coding upstream 79716 44450103 ~ 44482061 (+)
AMCG00009698 NA coding upstream 119721 44439574 ~ 44442056 (+)
AMCG00009689 NA coding upstream 175605 44382557 ~ 44386172 (+)
AMCG00009703 plxna3 coding downstream 71419 44641950 ~ 44642771 (+)
AMCG00009702 NA coding downstream 77485 44648016 ~ 44653748 (+)
AMCG00009701 plxna3,LOC106572068 coding downstream 90283 44660814 ~ 44666978 (+)
AMCG00009711 NA coding downstream 139308 44709839 ~ 44712088 (+)
AMCG00009708 otud5,LOC106571839 coding downstream 168148 44738679 ~ 44746329 (+)
G58527 NA non-coding upstream 78530 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 201715 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 236204 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 391988 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 635146 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 322314 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 347512 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 351553 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 572644 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 623992 45194523 ~ 45198264 (+)
G58522 NA other upstream 154209 44386497 ~ 44407568 (+)
G58324 NA other upstream 626015 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 1117357 43436990 ~ 43444420 (+)
G57830 NA other upstream 2483536 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2962653 41596229 ~ 41599124 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 14031 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 62219 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 179645 44750176 ~ 44760058 (+)
G58747 NA other downstream 485534 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 937236 45507767 ~ 45511037 (+)

Expression


Co-expression Network