AMCG00009700 (plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493)


Basic Information

Item Value
gene id AMCG00009700
gene name plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44584562 ~ 44603609 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009700
ATGGCTGCTTCTCGGCCTAAAACAGTGCGCGGGCGTCACTCTGCCCGGCTaaATGAGCCTCTGAGACCCATCAGGAAAGGAAAAGCTGCAGAGAACTCGAAGCAGCGgcagaaggagggagaggaggaggtgcGCCCTGTCCCTTCTCGACCACCCCCCTCCCGCGGCACCATGACCCCTGGCGGGCTGGCGCTGGCGTTCGCTCTCCTGTGCGAGGCCGGGATGTGGCTCGGCGGCGGGGGGCTGCCCTTTCCGGAGCCCTCGGGCACCCCATCCCTGGCTCCTGGCCACGCTGGCGTCTTCCGGGTGTCGGACACCAGCCTGACGCACCTGACAGTGCACCGCACCACGGGAGAGGTGTACGTGGGCGCCGTCAACTGGGTGTACAAGCTGTCGGCCAACCTGACGGAGCTGCGGGCTCACGTGACCGGCCCGGTGGACGACAACGCGCGCTGCTACCCCCCCCCCAGCGTCCGGGCCTGCGCGCACAAGCTGGCGCCCTCCGACAACGTCAacaagctgctgctgctggactaCGCCGGGGAGCGGCTGGTGGCCTGCGGGAGCATCTGGCAGGGCGTGTGCCAGTTCTTGCGGTTGGACGACCTGTTCAAGCTGGGGGAGCCACACTACCGGAAGGAGCACTACCTGTCGGGGGCGCGGGAGGCGGACGGGATGGCGGGCGtggtggtgggggaggaggaggggacgGCAGGAGGGGGAGGCGGCGAGGgcaagaggaagaagaagggaGGCAGCCGGCTGTTCATCGGCGTGGCCATTGACGGCAAGTCGGAGTACTTCCCCACGCTGTCCAGTCGCAAGCTGGTGGCGGACGAGGAGAGCGTCAGCATGTTCAGCCTGGTGTACCAGGACGAGTTCGTGTCGTCGCAGATCAAGATCCCCTCGGACACGCTATCCACCTACCCCGCCTTCGACATCTACTACGTCTACGGCTTCTCCAGCGGCACCTACATCTACTTCCTGACACTGCAGCTGGACACGCAGCTCACGCAGATGGACGCCGCGGGCGAGAAGTTCTTCACCTCCAAGATCGTGCGCATGTGTTCCAACGACACAGAGTTCTACTCGTACGTTGAGTTCCCGCTGGGCTGCACCAAGGACGGCGTGGAGTACCGGCTGGTGCAGTCCGCCTACAAGCAGCGGCCGGGCCAGCTCCTGGCGCGCGCTCTGGGCCTGCCCGAGGACGAGGACGTGCTGTTCGTGCTGTTCTCCCAGGGCCAGAAGAACCGGGCCAACCCGCCCCGTGAGACGCTGCTGTGCCTGTTCACGCTGCGCCAGGTCAACCAGGCCATGCGGGAGCGCATCCGGTCCTGCTACCGGGGGGAGGGCAAGCTGTCCCTGCCCTGGCTGCTCAACAAGGAGCTGCCCTGCATCAACACGCCTAAGCAGATCGGCGACGATTTCTGCGGCCTGATCCTGAACCAGCCGCTGGGCGGGTTGCGCGTGATCGAGGGCACGCCGCTGTTCGACGACCGGGCGGACGGCATGGCGGCGGTGGCGGCCTACACATACGGGCAGCACTCGGTGGTGTTCGTGGGCACACGCAGTGGCCACCTCAAGAAGATGAAAGCTGTGCTCTGTGCCGCGGTACAGCCGGGCCGCAGAAGCCGGGCCTCCACAGTGAGTCGGAGCCGCATGGAGAACTAA
>TU73244
CCCCGCCGCCCGAGTTGGTTGCGCCCAGATTTAAAGGGCCAGCTCCGCATCTAGTCCGTCCTCCCCAAGACAGCCAGGCTGTTTCTCAAGGCTCCGGCGAGCACAATGGACCCGTCTGGACTCGTGTCGGGGGATCGTCTCGGGAAGCGATGATCACAACGCGCAACAGGGCGGTCAGTACAGCACGCAGGCGAGCACACAgtccacagacagagacagagacagcagcAAATAAAACGCAGCTCAGAAGAACAACCCCGGGCAGCGGCGTGTGGATGAGGCTGTAACTGTTGCCGCTGAGCGCAGGCAGaaATGAGCCTCTGAGACCCATCAGGAAAGGAAAAGCTGCAGAGAACTCGAAGCAGCGgcagaaggagggagaggaggaggtgcGCCCTGTCCCTTCTCGACCACCCCCCTCCCGCGGCACCATGACCCCTGGCGGGCTGGCGCTGGCGTTCGCTCTCCTGTGCGAGGCCGGGATGTGGCTCGGCGGCGGGGGGCTGCCCTTTCCGGAGCCCTCGGGCACCCCATCCCTGGCTCCTGGCCACGCTGGCGTCTTCCGGGTGTCGGACACCAGCCTGACGCACCTGACAGTGCACCGCACCACGGGAGAGGTGTACGTGGGCGCCGTCAACTGGGTGTACAAGCTGTCGGCCAACCTGACGGAGCTGCGGGCTCACGTGACCGGCCCGGTGGACGACAACGCGCGCTGCTACCCCCCCCCCAGCGTCCGGGCCTGCGCGCACAAGCTGGCGCCCTCCGACAACGTCAacaagctgctgctgctggactaCGCCGGGGAGCGGCTGGTGGCCTGCGGGAGCATCTGGCAGGGCGTGTGCCAGTTCTTGCGGTTGGACGACCTGTTCAAGCTGGGGGAGCCACACTACCGGAAGGAGCACTACCTGTCGGGGGCGCGGGAGGCGGACG

Function

symbol description
plxna3 Enables identical protein binding activity. Acts upstream of or within several processes, including axonogenesis; branching morphogenesis of a nerve; and embryonic skeletal joint morphogenesis. Located in membrane. Is expressed in fin; nervous system; otic vesicle; and post-vent region. Orthologous to human PLXNA3 (plexin A3).

NR:

description
PREDICTED: plexin A3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009700 True 1671 mRNA 0.66 4 44598456 44603609
TU73244 False 933 TUCP 0.66 2 44584562 44599328

Neighbor

gene id symbol gene type direction distance location
AMCG00009699 NA coding upstream 82123 44492695 ~ 44502439 (+)
AMCG00009695 NA coding upstream 94483 44483967 ~ 44490079 (+)
AMCG00009696 flna,LOC108436314,LOC107712729,LOC101154674,LOC107570276 coding upstream 102501 44450103 ~ 44482061 (+)
AMCG00009698 NA coding upstream 142506 44439574 ~ 44442056 (+)
AMCG00009689 NA coding upstream 198390 44382557 ~ 44386172 (+)
AMCG00009703 plxna3 coding downstream 38341 44641950 ~ 44642771 (+)
AMCG00009702 NA coding downstream 44407 44648016 ~ 44653748 (+)
AMCG00009701 plxna3,LOC106572068 coding downstream 57205 44660814 ~ 44666978 (+)
AMCG00009711 NA coding downstream 106230 44709839 ~ 44712088 (+)
AMCG00009708 otud5,LOC106571839 coding downstream 135070 44738679 ~ 44746329 (+)
G58527 NA non-coding upstream 101315 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 224500 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 258989 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 414773 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 657931 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 289236 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 314434 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 318475 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 539566 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 590914 45194523 ~ 45198264 (+)
AMCG00009694 LOC103385381 other upstream 14031 44561777 ~ 44570531 (+)
G58522 NA other upstream 176994 44386497 ~ 44407568 (+)
G58324 NA other upstream 648800 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 1140142 43436990 ~ 43444420 (+)
G57830 NA other upstream 2506321 42036018 ~ 42078241 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 29141 44632750 ~ 44651967 (+)
AMCG00009706 pim1 other downstream 146567 44750176 ~ 44760058 (+)
G58747 NA other downstream 452456 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 904158 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 956368 45559977 ~ 45572255 (+)

Expression


Co-expression Network