AMCG00009707 (LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533)


Basic Information

Item Value
gene id AMCG00009707
gene name LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44764036 ~ 44768228 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009707
TAACGGTATATTAACAGTATGGGCTTATGAAACTCACTTTAATGGACTTTaagtagttctagatttgcatgaacagtttttcttAAGTTGTCGTGattgaattcaaaaggaaagttagaaCCTTGCTGAGTCGATCAGAGCTATATCAGCTGCCATTCTGCAATTGTGTATCAAAACGAGagcatatacataaacaagaaaataataaacggCTCGGTCTAACAGCTGTGTacatcaatacagaaaacacgcttttcaacactacagtgcgcTATAATAGAAACAGATCAAACAGATCAAGACAATGACCcaggaacgagagtagttgTCATTCGTTACTTTCCAGCCCTGCCCAGACAACACCACATCCTCGCAGCAGTAAGGTTGAGGGTTGGTTGGGGCCACAGCGCTGTGACAGCGTCAGAAACGCCAATTGCAACGCACGCGAGGTAACGTTTGTGAGCGGGTCCGAGCAAAGTTCCCTCGTGTGATGCGGTGGAGAGCTAATAGCAGCGCTATCATACCTCGGCAcagtctgtctttctctgaGAACTGAAAGGATGGCTTAGACTAAGAGATTAGATTGCGTTGTTGATTTTTACAATCCCTTGTTGTAATGCCAAGTATCAACTGATAAGTTTAAGAAGTTTAAGGATATTTCAAATTTGCTTGCCTTTACAGAGCAACAGTTAATAACCTTAATAATAAATTTTGGTGTGACTGTGACTGTTCAGCTGTGCCTTCCTGTAACATGCAGACCTGAGTTCAAGACGTGACAGAAATATAAACGATATAGATCTGTACTATATATTAATGCGACCATAATAGTAAACTGAATGATGTCAGATTCTATTTCAGGGCAACTCTGGACCTTTACAACTTGAACCTAATAAAACTGCATCACTTTATCTGGGCTAATTGGTTGTGTCTCCTGATGTGCTGCTGGAAAATAGAGCTCTGTCTTTGTATAAGGCCTGTCTGGGAGGGGCACTTCATACCGGCTGTTCTTCTCTCTCACATTTTGCTTCAGTAGTTCAGACAGACCACCATAGAAGTCGGTGGAAGAGTGTGGAGTTTATTGGGTCTGACCCCGCTTGGCTGAGCGTGCGTCTGATTGACTTTGTCCCTCCCCAGCTGTACTTTTAATCTGCATTCCTGTACCTGCAGAACTGGTCTGATCACCAAAACTGTAGTATCGACCCTTCTTCAGCCCGGTTCTGTCTCGGGTATTTGTTATTACGGTGACATCATTTGGCCGTCGCTGGCCGCTTCTCGGGCGTATGTAGAACAGGGCGAGCCGGAACGGGTCCCACGAGAGAAGGTGGGTTTGTTTGCAGGCAGGGACTGAAGTTCAAAGACGAGCGAGTCCACGGCTCAGTGCGCAACCTGCGGGACTGCGGGGAGACGGACTGCCGGTGAATTAATCCCCGAGAACTGATTCTGCGGCCCCGGTGTGGAGAGTGTCCCGGGTTTAACCGGTGCgtgagaggtggagagagatgCGGGGTGTGTGCCTCGTGTGTGCGCCAGGTGTGTTTGGTTTATGATGGATGTTTGTTCGCAGTGTATCAGGGTTGTCCAAGAGCTGTGTGCGTTGTGCATTGGGTGTGTGGGTGGAATAGAGTGCCATAAACAAACAGCTGTTAAAGAAAGGAAGAACGAAGTGTGTCAGGTCTGACAGTGCGTCTGTGAGAGACGCTCCAAGAGGCTGTTGCTGTTTGAGCAGGGAGTGACCAGAAACCTCCCCCACCATTGTGTGAGAAACAATGGAGCCTTTGTGATGCGGGGGGGGTATCGCTGGCGGAGGGACTCGGCCTGTGTGGGGGGTGCTCCGGGGCCTGCCTGCCGACCGGgtttcacagtttgtttttcttcctgcgCTCCCCCTCCAGGTAACAAGAAGCTCAAGTACATCAGCCTGGCCATCCTGGTGGTGCAGAATGCCTCGCTCATCCTCAGCATCCGCTACGTGCGCACGCTGCCCGGCGACCGCTTCCTCTCCACCACCGCTGTCGTCCTGGCTGAGGTGCTCAAGGTGCTCACCTGCCTGCTGCTCATCCTGGTGCAGAAGCGCGGGAGCGTGCGGGAGTTCGTGGGGCTGCTGTATGACGCCATCGTTGTGCAGTACATGGACACCCTGAAGCTGGCCGTGCCCTCGCTCATCTACACCCTGCAGAACAACCTCCAGTACGTGGCCATCTCCAACCTGCCTGCCGCCACCTTCCAGGTGACCTACCAGCTGAAGATCCTGACCACGGCTGTCTTCTCGGTGCTGATGCTGCGCAAGAGCCTGTCGCGGCTGCAGTGGGTGTCCCTGGTGCTGCTGTTCACGGGCGTGGCCATCGTGCAGGTGGAGCAGGAGGGCGGCCGCAAGGAGACATCGGTGGTGAGCGGCGGCCAGAACTACGGCATGGGCCTGGTGGCCGTGGTGGTGTCCTGCCTGTCCTCAGGCTTCGCGGGCGTCTACTTCGAGAAGATCCTGAAGGGCAGCTCGGCCTCGGTGTGGTTGCGCAACGTGCAGCTGGGCATCTTCGGCACGGCGCTGGGCCTGCTGGGGCTGTGGTGGAAGGACGGCCAGGCGGTGGCCGAGAGGGGCTTCCTGTTTGGCTACACCCCGCTAGTGTGGGGTGTCATCTTCAACCAGGCGTTCGGCGGCCTGCTGGTGGCTGTGGTGGTCAAGTACGCGGACAACATCCTCAAGGGCTTTGCCACGTCCTTCTCCATCGTAGTGTCCACCGTCACCTCCGTCTACCTCTTCGGCTTCCACGTGGACCTGTTGTTCACGCTGGGCGCCGGGCTGGTCATCGGAGCCGTGTACATAACCCGGAAGGTTGTTTTGTGTGGCGGCGTGTTGGCGGGACAGAACCGGTCTCTGGTGGAACGGCAGCACGAGTTTAGAGTCCGCATTCAGGAGGAAGATGGATTACAGTTAATCCCGGCTCAACAGAGCCTTCCTCGCCAGTACAGCACAGATGTTTAA

Function

NR:

description
PREDICTED: UDP-galactose translocator-like

GO:

id name namespace
GO:0015780 nucleotide-sugar transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005338 nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005351 carbohydrate molecular_function

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009707 True 2980 mRNA 0.53 4 44764036 44768228

Neighbor

gene id symbol gene type direction distance location
AMCG00009708 otud5,LOC106571839 coding upstream 17707 44738679 ~ 44746329 (+)
AMCG00009711 NA coding upstream 51948 44709839 ~ 44712088 (+)
AMCG00009701 plxna3,LOC106572068 coding upstream 97058 44660814 ~ 44666978 (+)
AMCG00009702 NA coding upstream 110288 44648016 ~ 44653748 (+)
AMCG00009703 plxna3 coding upstream 121265 44641950 ~ 44642771 (+)
AMCG00009709 NA coding downstream 646 44768874 ~ 44780968 (+)
AMCG00009712 LOC107584919,LOC106904750,LOC106522891 coding downstream 88299 44856527 ~ 44881725 (+)
AMCG00009714 usp11 coding downstream 133198 44901426 ~ 44916843 (+)
AMCG00009715 NA coding downstream 159639 44927867 ~ 44933814 (+)
AMCG00009716 elk1,LOC103384389,LOC102208123,LOC100703163 coding downstream 182445 44950673 ~ 44962284 (+)
G58527 NA non-coding upstream 280789 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 403974 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 438463 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 594247 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 837405 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 124617 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 149815 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 153856 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 374947 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 426295 45194523 ~ 45198264 (+)
AMCG00009706 pim1 other upstream 3978 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 112069 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 160427 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 193505 44561777 ~ 44570531 (+)
G58522 NA other upstream 356468 44386497 ~ 44407568 (+)
G58747 NA other downstream 287837 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 739539 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 791749 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 805042 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 808311 45576539 ~ 45584727 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035452 slc35a2 coding NC_007119.7 CM002892.2 8947623 ~ 8957679 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_08725595_08733769 SLC35A2 coding CI01000010 null 8724967 ~ 8733769 (-)