AMCG00009709


Basic Information

Item Value
gene id AMCG00009709
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44768874 ~ 44780968 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009709
ATGTGCCGCTCGCTGGATTGTGGCAGAATAAGCCCCGAGTCCATGTATGTGGCGTTGTCATGTGGCGTCGCCAGTTACTGGGGTTGCCAGAGAGCGCAGAGGGACACCCAGGCCTCGGCCTCCTCAGATCGCCTGCCCGTAGCCGCCGTCTCCCTGGACCCGGTACCTGGGAAAGGAGAAGGGCTGCTAACGCGAGGGTCTGACCCTGGGAACGGGGGGACGGCTGCCACCTCCCCACACCGGCTGCCACCACCCGGCGTGCCAAGAGACTCACGGCAGGAGGGAGGTCTGGAATCACACGCGTGCCTTACTGTGAAAGTGCAACTCCAGCTGCTCGGAGAAAGAGACACCCCTGGGGTTGGGGGAGGGTCTGGCCCGATCAAGTCCCGAAGTTCAAAACCGAATTCCcgggaggaggacaacccccTCCCCAGTCTCCTTCCTCGGTCTCCTCCTCCAAAATCTGTGACCCTCCCCCTGGTGACTGAGATCCGGGAGACTCCACAGCCCCCTAACGGTTTCCTCTCGGCCCCCAAGACCAGATTCCCGCCCCGCAGTGAGAGCATGAGCCACAAACGGGGCCTCTTGGACTCCCCTTCGTCTCGAGCCTGGTCTTCAAGGGGCCTCGGTCTGGGGCCCCTTCGTGACGCTGTGAATGTGAATCCAGGCTCCGTTGACTGGCAGGACTCGTTcggatctctctctcttgtgaCATTCGACTCTTCGAATGGCCGGGCCGaCCAGACAGCCGTGACGATGAGCCTGCAGTGGACCGCGGTCGCCACCTTCCTGTACGCGGAGGTCTTCGCCacgctgctgctgtgtgtgcccTTCATCTCCCCCACCCGATGGAATAAGATCTTCCGCTCCCGGCTGGTCAAGGCCATCATGACTTACGGCAACACCTACTTCGTGGTGCTGATTCTGATCCTGGTCTTCCTGCTGATCGaCGCCGGGCGGGAGGTGCGCAAGTACAGCGTGACGGAGAAGGTGGACCTGACGAACAACCCCACGGCGGTGGAGCACATCCACATGAAGCTGTTTCGCGCCCAGAGGAACCTCTACATCGCCGGCTTCGCCCTGCTGCTCTGGTTTCTGCTGCGGCGCCTGGTCACGCTCCTGTCCCAGCAGGCCTGCATGATCGCGTCCAACGAGGCCTTCAAGAAGCAGGCCGAGGGGGCCAGCACCGCTGCCAAGAAGTACATGGAGGAGAACGAGACCCTGCAGGAGACCCTCCGGGAGGCCGGCATCGCCGCGCCCGAGGCCGGGAAGAAGGCGGGAGGGAGAGCGGGAGTGGAGGAGGAGAACAAGAAGCTGAAGGGAGAGGTGCACCAGCTGAAGGACGAGCTGGACACCACCAAGAAAGCGCTGCAGAAGTGCGAGGGTGACGTGAAGGCCATCAAGAAGCAGGCCGAGAACCTGACCCGGGAGTACGACCGCCTGCTGGACGAGCACTCCAAGCTGCAGGTCAGTGCCCACCCCGGGGCCACCGGACAGTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14009 BCAP31, BAP31; B-cell receptor-associated protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009709 True 1500 mRNA 0.63 11 44768874 44780968

Neighbor

gene id symbol gene type direction distance location
AMCG00009707 LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533 coding upstream 646 44764036 ~ 44768228 (+)
AMCG00009708 otud5,LOC106571839 coding upstream 22545 44738679 ~ 44746329 (+)
AMCG00009711 NA coding upstream 56786 44709839 ~ 44712088 (+)
AMCG00009701 plxna3,LOC106572068 coding upstream 101896 44660814 ~ 44666978 (+)
AMCG00009702 NA coding upstream 115126 44648016 ~ 44653748 (+)
AMCG00009712 LOC107584919,LOC106904750,LOC106522891 coding downstream 75559 44856527 ~ 44881725 (+)
AMCG00009714 usp11 coding downstream 120458 44901426 ~ 44916843 (+)
AMCG00009715 NA coding downstream 146899 44927867 ~ 44933814 (+)
AMCG00009716 elk1,LOC103384389,LOC102208123,LOC100703163 coding downstream 169705 44950673 ~ 44962284 (+)
AMCG00009719 NA coding downstream 185911 44966879 ~ 44969079 (+)
G58527 NA non-coding upstream 285627 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 408812 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 443301 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 599085 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 842243 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 111877 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 137075 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 141116 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 362207 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 413555 45194523 ~ 45198264 (+)
AMCG00009706 pim1 other upstream 8816 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 116907 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 165265 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 198343 44561777 ~ 44570531 (+)
G58522 NA other upstream 361306 44386497 ~ 44407568 (+)
G58747 NA other downstream 275097 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 726799 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 779009 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 792302 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 795571 45576539 ~ 45584727 (+)

Expression


Co-expression Network