AMCG00009712 (LOC107584919,LOC106904750,LOC106522891)


Basic Information

Item Value
gene id AMCG00009712
gene name LOC107584919,LOC106904750,LOC106522891
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44856527 ~ 44881725 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009712
ATGTCACCATGCCTCCCGTTGGCGTGGGGGAGCAGCTGTCACTCGGCCCGCTGGTGGGTGCTGCTGTGGGTGCTGTGGGCGTGGTTGGGACAGGGGGCGTGCGGTCACCACGGCACCCAGCCCCACTCCATCAAGATCGAGGGCGACATCACGCTGGGCGGGCTGTTCCCGGTGCACTCCCGGGGCCCGGCGGGGCTTCCCTGCGGCGAGATCAAGAAGGAGAAGGGCATCCACCGCATGGAGGCCATGCTGTACGCCCTGGACCAGATCAACAGCGACCCCGAGCTGCTGCCCAACATCACGCTGGGCGCACGCATCCTGGACACCTGCTCCCGGGACACCTATGCGCTGGAGCAGTCGCTCACCTTTGTGCAGGCGCTCATCCAGAAGGACATCTCGGACGTGCGCTGCTCCAACGGCGAGCCACCGCTCATCCGCAAGCCAGAGAGGGTGGTGGGTGTCATCGGGGCGTCGGCCAGCTCCGTGTCCATCATGGTGGCCAACGTGCTGCGGCTCTTCGAGATCAGCTACGCCTCGACAGCCCCGGAGCTCAGCGACAACAACCGCTACGACTTCTTCTCACGTGTGGTGCCGCCCGACTCCTACCAGGCCCAGGCCATGGTGGACATCGTCAAAGCCATGGGCTGGAACTACGTGTCCACGCTGGCCTCCGAGGGCAACTACGGCGAGAGCGGTGTGGAGGCCTTCGTCCAGATCTCCCGCGAGGCCGGTACAGCCACGCCCACACCGCCACCCCCGTCCAACCCCCACCCAACCCCTCTGCCCCCTGTCCTCTTCCACTTGGTGCCATCCATACGCAACCCTACAGTTGACCAGTATCGCCCCAGCGGGCTGTGCATCGCCCAGTCCCTGAAGATCCCGAGGGAGCCCAAGCCGGGCGAGTTCGACAAGATCATCAAGCGGCTGATGGAGACATCCAACGCACGGGGCATCATCATCTTCGCCAACGAGGACGACATCAaGCGTGTCCTGGAGGCGGCAAAGAAGGCCAACCTGACGGGTCACTTCCTGTTCGTGGGCTCCGACAGCTGGGGTGCCAAGAGCTCACCCATCTTGGACCAGGAGGACGTGGCAGAGGGGGCCGTCACCATACTACCCAAAAGAGCCTCCATCGAGGGGTTCGACCAGTACTTCACCACGCGCTCCCTGGAGAACAACCGCAGGAACATCTGGTTTGCCGAATTCTGGGAAGACGACTTCAAGTGCAAGCTGACCAGGCCGGGCATCAAGCTGGACGATGGGAGGAAGAAATGCACAGGGGAGGAGAGGATCAGCAGAGACTCCGCGTATGAGCAGGAGGGGAAAGTGCAGTTCGTGATCGACGCTGTCTACGCCATGGCACACGCGCTGCACAGCATGCACCTGGACCTGTGCCCCGGCGCAGCCGGCGTGTGCGAGAAGATGGACCCGGTGGAGGGCAGGATGCTGCTGCAGTACATCCGCTCCGTCAACTTCAATGGCAGCGCAGGGACCGGGGTGATGTTCAACGAGAACGGAGACGCGCCGGGCCGCTACGACATCTTCCAGTACCAGCTGTCCAACACCACAGCTCCCGGGTACAGAGTCATCGGCCAGTGGACCAATCACCTGCGGCTCAACGTGGAGGAGATGCAGTGGTCTGGGGGGGAGCGCCAGGTGCCCGACTCGGTGTGCAGCTTCCCCTGCCAGCCGGGGGAGCGCAAGAAGATGGTGAAGGGGGTGCCCTGCTGCTGGCACTGCGAGCTGTGCGACGGCTACCAGCACCAGGCGGACGAGTTCAACTGCGAGACCTGCCCCTTCGACATGCGGCCCACCGAGAACCGCACGGCCTGCCGCCCCACGCCCATCATCAAGCTGGAGTGGCACTCCCCCTGGGCCATGCTGCCCATGTTCCTGGCCATCCTGGGCATCCTGGCCACCACCTTCGTCATCGTCACCTTTGTGCGCTACAACGACACGCCCATCGTGCGCGCCTCGGGCCGGGAGCTGAGCTACGTGCTGCTCACGGGCATCTTCCTCATCTACGCCATCACCTTCCTGATGATCGCCGAGCCGGGCGCCGTGGTCTGCGCCTTCCGCCGcctgctgctgggcctgggcATGTGCATCAGCTACGCCGCACTTCTCACCAAGACCAACCGCATCTACCGCATCTTCGAGCAGGGCAAGAAGTCCGTCACGCCGCCCCGCTTCATCAGCCCCACCTCCCAGCTGGCCATCACCTTCATCCTCATCTCTCTGCAGGTCCTGGGCGTGTTCGTGTGGTTCGGGGTGGTGCCCCCCCACACCATCATCGACTACGAGGAGCAGCGGCCGCCCGATCCCGAGCTGGCGCACATTTCTTTCACTTTCTATCTGTATTTCTTGTTGTCTCCTCTGCAGATGTACATCCAGACCATGACGCTGACCGTGTCGATGAGTCTGAGCGCCACGGTGTCTCTGGGCATGCTGTACATGCCCAAGGTCTACGTGATCCTGTTCCACCCCGAGCAGAACGTGCAGAAGCGCAAGCGCAGCTTCAAGTCGGTGGCGCAGGCCGCGACCATGTCCACCCGGCTCTCGCAGAAGTCCAACGACAAGCAGAATGGCGAGGCCAAGCCGGAGGAGAGCAAGGACACAGTGATATCCAGGCACTGTGACCCACCTATCATACGAgttcctgttctctctctctccctgcctttcATTCAAGATGCTTCTGTTACTCAGTCCGTttcatcacaaaataaaaacgctCCTCTTCcactctccttctctttctctctctctctcttctccatcTCTCATTATTTCTCCCTGTCTCCCAGAGATTCTCCTATACATCCATCCTTTGCAGCTGGTCTCATTAGTGCCCTAAAATGTATAATAAGGTGTCTTCTGTTCAGCACGGCTTTCCCTTTGTACGGGGGggagaaaaatgacaaaactaaAGAAGACGAGAGTCAGTGGGCAGCTGTTAACAGGGGTCGTTGCCTCCTGTCTGTGCGGAACGAGACAGATGCACATCTCTGCTCCCCAAGCGCCGGCGTCAAGTGGAAACTCGGCCAAGACGTCATCGCCTGCCTCTCGCTGCGTCTCATTAGCTCCTTCCCTGTCCCGCTTTCCAGAAACTGTCCTTATATCGCTGCCTCTCTCCCGTCCTTGCTTCCCCCCTCTGTCACCCACACTTATAATTCCGACTCAGTGTCAGATGCTGTGCAGGCCGGGCGTACTGTCAAAGCAGACAGGAAGAAACAGCGAGGGGAGCCCTGA

Function

NR:

description
PREDICTED: metabotropic glutamate receptor 6-like

GO:

id name namespace
GO:0007196 adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001642 group III metabotropic glutamate receptor activity molecular_function

KEGG:

id description
K04610 GRM8; metabotropic glutamate receptor 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009712 True 3252 mRNA 0.61 13 44856527 44881725

Neighbor

gene id symbol gene type direction distance location
AMCG00009709 NA coding upstream 75559 44768874 ~ 44780968 (+)
AMCG00009707 LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533 coding upstream 88299 44764036 ~ 44768228 (+)
AMCG00009708 otud5,LOC106571839 coding upstream 110198 44738679 ~ 44746329 (+)
AMCG00009711 NA coding upstream 144439 44709839 ~ 44712088 (+)
AMCG00009701 plxna3,LOC106572068 coding upstream 189549 44660814 ~ 44666978 (+)
AMCG00009714 usp11 coding downstream 19701 44901426 ~ 44916843 (+)
AMCG00009715 NA coding downstream 46142 44927867 ~ 44933814 (+)
AMCG00009716 elk1,LOC103384389,LOC102208123,LOC100703163 coding downstream 68948 44950673 ~ 44962284 (+)
AMCG00009719 NA coding downstream 85154 44966879 ~ 44969079 (+)
AMCG00009722 NA coding downstream 93935 44975660 ~ 44984837 (+)
G58527 NA non-coding upstream 373280 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 496465 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 530954 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 686738 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 929896 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 11120 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 36318 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 40359 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 261450 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 312798 45194523 ~ 45198264 (+)
AMCG00009706 pim1 other upstream 96469 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 204560 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 252918 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 285996 44561777 ~ 44570531 (+)
G58522 NA other upstream 448959 44386497 ~ 44407568 (+)
G58747 NA other downstream 174340 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 626042 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 678252 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 691545 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 694814 45576539 ~ 45584727 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003483 grm6b coding NC_007122.7 CM002895.2 25634041 ~ 25679721 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_08878920_08926849 GRM7, GRM6A coding CI01000010 null 8878829 ~ 8927698 (-)