AMCG00009730 (magix,LOC101063258,LOC108228699)


Basic Information

Item Value
gene id AMCG00009730
gene name magix,LOC101063258,LOC108228699
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45089203 ~ 45093238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009730
ATGAGTACAGTCCTCTGCACACTGTGGCCGTCGCACAGCCCAGCTCGCCTACCGCAGCTCCTGGTGCGACATCTTGTGCAACAGCGTTGCCAGCCGAGCGAGTGTCTGACCGGCCGGGGCGCTGTGACCACAGAGAACGACAAAGAGGACAGAAAAGACAGAGCCTCTGAATCTTTCTACTACTATTCCTCCAGTGAGCGCCCCTCGCTCCTCCGCTCCCGTGTCGTCCCCTGCACCACCCGGCAGCCACGGGACGGGGAGATCTCGGGCGTGGACTACAATTTCGTCTCCATCGAGGACTTCTTCTCCCTGGAGGAGTCCGGGGCGCTGCTGGAGAGTGGCAAGTTCAAAGGCAATTACTACGGGACCCCCCGGCCCGTGCACATCGGCCCTGAGAGCCCCCCCATCACCTACCAGGAGCACCGCAACCTACTCAGGAACTTCAGGACCCGCAGCAAGTCCCTCAGCAACCTGGAGAAGCCTGGAGAGGAGGACAACAGCGAGGAGGACTCGGGCCTGTCAGttgcAGGGCTGTGTATTaatctccctgtctctccccgTCTGTGTCCTCCCCTCCCCAGCCTGGTGACGATGTCTAAGGCAGCCGTGAAGAAACTGCACTGGCGTTCCAAGGTGCAGGAGAGTTTCGTTCCTCTGGGCGGGGCCTCAGGGGAGCTGGGCGTGTCCATCGGGGGCGGGGCTGACTATGGGGAGTTCCCTTTCGTCACCCTGGTCCAGGGGGGCGGGGCCAGCGTGGGCGACATCATCCTGGAGATCGGGGGGACCCCCGTGCTGGGAATGACCCTCGCTCCTCCCACGGAGGGGCATCCCCTCGCTGACATGTCACAATGA

Function

symbol description
magix Orthologous to human MAGIX (MAGI family member, X-linked).

NR:

description
PREDICTED: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009730 True 852 mRNA 0.63 6 45089203 45093238

Neighbor

gene id symbol gene type direction distance location
AMCG00009721 NA coding upstream 57423 45005169 ~ 45031780 (+)
AMCG00009726 NA coding upstream 85631 45001138 ~ 45003572 (+)
AMCG00009720 NA coding upstream 91195 44989273 ~ 44998008 (+)
AMCG00009722 NA coding upstream 104366 44975660 ~ 44984837 (+)
AMCG00009719 NA coding upstream 120124 44966879 ~ 44969079 (+)
AMCG00009728 NA coding downstream 12298 45105536 ~ 45111832 (+)
AMCG00009727 NA coding downstream 22425 45115663 ~ 45119186 (+)
AMCG00009731 NA coding downstream 42186 45135424 ~ 45136858 (+)
AMCG00009729 LOC108228711,LOC105898895,LOC107731232,LOC103365588,LOC103384398,LOC101079199 coding downstream 46302 45139540 ~ 45169283 (+)
AMCG00009738 NA coding downstream 81928 45175166 ~ 45184732 (+)
G58668 NA non-coding upstream 165503 44922084 ~ 44923700 (+)
G58660 NA non-coding upstream 167566 44918043 ~ 44921637 (+)
G58666 NA non-coding upstream 196125 44892845 ~ 44893078 (+)
G58527 NA non-coding upstream 605956 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 729141 44328271 ~ 44360062 (+)
G58776 NA non-coding downstream 49937 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 101285 45194523 ~ 45198264 (+)
G58825 NA non-coding downstream 173701 45266939 ~ 45275033 (+)
G58830 NA non-coding downstream 183250 45276488 ~ 45277596 (+)
G58822 NA non-coding downstream 236546 45329784 ~ 45332856 (+)
G58747 NA other upstream 31329 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 329145 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 437236 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 485594 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 518672 44561777 ~ 44570531 (+)
AMCG00009761 NA other downstream 414529 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 466739 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 480032 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 483301 45576539 ~ 45584727 (+)
G59084 NA other downstream 661348 45754586 ~ 45755115 (+)

Expression


Co-expression Network