AMCG00009742


Basic Information

Item Value
gene id AMCG00009742
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45251637 ~ 45277597 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009742
ATGACCTCTGTCCCCGACCCCACCGGGGCGAAGCCGCCGAGAGGCACGCGCTCCCCCCAGTCACAGGACTCTGCCCCCAAGAAAAAGAGTGCGGGTGGCAGCGGGCGCCCGGGCAGCGGCAGTAAGAAGGGCAGTCTGCAGGAGGCTCGGCGCAGGGGCAGGATGGACCGCAGCCGCGGGGAAGAAGAGATGAGCAGCCAGCTCGGCAAGCTGGACCTGAGCAGCAGTGCTGGACCCAGCGGGACCGGCCTGGTCTACAGCGACTCCAGCACCAAGTACTGCTGCCTGTGGGACCCCAGtcaccCGGAGTGTCCGGAGCGAGTGACCGCTGCCATGCAGATGGCCCGACAGGAGGGGCTGGTGTCCCGCTGTGTGGAGGTGGAGGCCAGGTCTGCCACAGAGGAGGAGTTGCTATTGGTCCACAAGAAGGAGTTTGTGGAGATGATGAAATCCACTCAGACGATGAGCCAGGAGGAGCTGAAGACTCTGTCTGAGACGTACGACTCGATCTTCCTACACCCTgaGTCGTTCCGCAGTGCGTGCGTGTCCGTGGGCTCCCTGCTGCAGCTGGTGGACCAGGTGCTGAACGGGGAGATCAGGAACGGCTTCTCTGTGGCCAGGCCCCCGGGGCACCACGCCCAGGTGGATCTGATGAACGGATACAGCATGTTCAACAACCTGGCCATCGCTGCTCGATACGCAAAGAGCACACACAACCTGGAGAGggtccTGATCGTGGACTGGGACGTGCATCACGGACAGGGGCTGCAGTACATCTTCCAGGATGACCCCAGtgtgCTGTATTTCTCTATACACCGCTATGAGGACGGGCGCTTTTGGCCCCACCTTGTGGAGTCGGACAGCACTGCGGTGGGTAGCGGCCCGGGGACCGGCTTCAACATCAACCTGCCCTGGAACCAGggtGAGATGGCTGCCAGTCCTCAGTGTTTCTCCATTCTCACTCACCTGCTGCACGGCCTGGCACAGGGCCGGATGATCATGGCCCTGGAGGGGGGCTATAACCTGCGGTCCACGGCGGAGggggtgtgtgcgtgtctgagGGCCCTGCTGGGAGACCCCTGTCCCAAACTGGAGCCCCCCGTAGCCCCGTCCGTGTCGTACGGGGAGGGCGAGGGTTGGTGCCAGGTGGCGGCGAGGGAGACGGGGCTGGTGTATGACGAGAGGATGCTGGAGCACCACAACATGTGGGACAGcCACCACCCTGAGCTCCCTCAGAGGATCTCCAGCATCTTCAACCGCCACCGGGACCTGGGGCTGCTGGACCGCTGCCTTCGCATACCGGCCCGCCAGGCCACGGAGGAGGAGCTGGCCATGTGCCACAGcGAGGAGCACATTGCCACGATGCGTGGCTCGGCGGGGTTGAAGCCCAGGGAGCTGCACCGGCTGGGAGACGATGCGGCGCTGACGGCACGCTACGCTCAGAGCCTGGAGCCCGGGCTGAGGGTGCTGATTCTGGACTGGGACGTTCATCACGGCAATGGGACACAGCACATCTTCGAGGACGACCCCAGcGTGCTGTACATCTCACTCCACCGCTATGATGACGGGCTGTTCTTCCCCTGCTCGGAGGACGCCGACTACGACCAGGTGGGGCGGGGCCAGGGGCGGGGCTTCAATGTCAACATCCCCTGGAGTGGCGGCCGGATGGGCGACCCGGAGTACCTGAGCGCCTTCTTGTGGGTCGTCATGCCCATTGCACACCAGGTCGGCCAGGCTCAGCACCAGCCTGTGCTCGGACTGCAGCCCGTGGAACAGCATGTGCTCATTGACATAGCGGCCACACAGCACCTGAGAGAGGAgcggagagagagcgagggaggaggggagagcaAGTCTGGGCTCCGGATCTCTCACCTGGTAGCAGGACAGACAGAGCCAGTTCTCCGCCTCACTGCCGCACTCCTCACAGGGCCGGGACACGTCCACCCCGCCGGCAGGCAAGGGGTTAACAGCCTGCAGCAGGGCATTCTGGGTACCCTGATTGGGTGGCTGGAAGAGAGACATGGCGTTACTCACACTCAGGACACTCGAGCTGCCGTTATCGAGCCGAGCCGGAGCGTTACCTCTGACCCGTCACCCCTGGCGTCGGTGCGGCTCTCCTCCGGGGGGATGGACTTCACCTTCCTCCTGGCCCCGCCCACCGGCACCGAGGCTGGGCTGTGA
>TU73621
NNcagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatctatgggcgctgtgtgtcagtgtgtatatatacctgtgggctctgtgtgagtgtgtcagtgtgtatatatacctgTGGgcgctgtgtgttttgtgctgtgGTATTGAGATCCTCTTATTTAAAGCTTGTGAAACCTGGTTGTTCCTCTGCAGaaacctctctctcacacaaacacacgcacacactgtgGGCTGAGACCCGGCTGGACTGGCCTGCGTCTCTgcggcagagagagagaataaccGAGATAGAAATGAATCACAGAGAGacgtggagagagagagagatagaggccGGGGACTGAACAGaatcagagacagagagagggaagatagaagagaagagagaacgCAATCAGgaagagggagatagagaggcTGAAGAGAGAGAACGCAAGGGCGAGGGCAGGCGGGTTGGTGGGCGTGAGGGAGCCGCTGTTTCAGTCCCCTGTGTATTGGGGTCTCGCTATTGCTCAGCACTGTCTCTGTGCGACAGAGATAAGAGCCCTGGTTCACAGTAGCGCTTTTCTAGGGAAGCACCGTCCCAGAGCCGCACACCCAGCGCTGCCCGTCTCTCACCCCGCCCCCGGTCCTTCCCCGtccccctgtccctctctcagcctcttcctgtccctgtccctctctcggCCTTGGTCTTgtcctctccctgtccctctcttgGCCTCTTCCTCTCGCtgtctctgcttctctctctccttataacgtctttttttccccacagactGCTGTGGTGCATCCGTGCATTGCCTCTTCCCTGGTTGTAGTCGCTCATTCCAGTGCCTCCCGGACGTGTTCTGATTCGGTGGCTAAGATGataggtgtgtttgtgtagaaataataaaatattaaaaactcactggttgtgtttgttgtgtgcgTCTCTGAGGGGGTGCATGCgttgagtgtgtcagtgtgttgtctgtgtgtgtgttagtgttttgtCTTTAACCTCTGTCCTCTTGCTGACAGAGCctaccccctctccctcctctctctctctgtccctctctttctctctcactgtgccGTCTGATAACCTCTTATCAACACAGCGCAGCCACCAGAGTGTAAGCCACCGGCCACATCCCGAGCGCATGCCCTGCCGTctgcctcctccctccctcccctctctctctctctctctttctctctctctcaattcaattcaattcaattcaattcaattcaattcaaggtgcTTTCAATTCTCTGTCACACACCCATGTTGTTCCTGACACTCCTTCAGCATTCTCTCTCGGCCTCCCTTCTTTGCCGCCATGTGTCcacactctctcgctctcgctctgcCTCTCTCAACCCACAGGGCCGGGACAGACAGAGCCAGTTCTCCGCCTCACTGCCGCACTCCTCACAGGGCCGGGACACGTCCACCCCGCCGGCAGGCAAGGGGTTAACAGCCTGCAGGTGAGGGCACCACGTCAACGGCTCCACCAGGAACATC

Function

GO: NA

KEGG:

id description
K11407 HDAC6; histone deacetylase 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009742 True 2184 mRNA 0.64 22 45251637 45261295
TU73621 False 1534 lncRNA 0.53 2 45252384 45277597

Neighbor

gene id symbol gene type direction distance location
AMCG00009740 NA coding downstream 4693 45245712 ~ 45246944 (-)
AMCG00009733 NA coding downstream 127633 45120311 ~ 45124004 (-)
AMCG00009732 NA coding downstream 136752 45113433 ~ 45114885 (-)
AMCG00009724 LOC108265805,LOC108437579 coding downstream 164150 45057674 ~ 45087487 (-)
AMCG00009725 LOC105419832 coding downstream 205204 45042846 ~ 45046433 (-)
AMCG00009747 cdk20,LOC107727427 coding upstream 3605 45281202 ~ 45283020 (-)
AMCG00009746 LOC105912249 coding upstream 9421 45287018 ~ 45305373 (-)
AMCG00009744 NA coding upstream 37678 45315275 ~ 45318328 (-)
AMCG00009745 mecp2,LOC105898998 coding upstream 68384 45345981 ~ 45351180 (-)
AMCG00009754 NA coding upstream 119592 45397189 ~ 45402415 (-)
G58808 NA non-coding downstream 1617 45184361 ~ 45250020 (-)
G58807 NA non-coding downstream 9704 45219629 ~ 45241933 (-)
G58761 NA non-coding downstream 132413 45090217 ~ 45119224 (-)
G58724 NA non-coding downstream 251403 44998032 ~ 45000234 (-)
G58707 NA non-coding downstream 334748 44916631 ~ 44916889 (-)
G58901 NA non-coding upstream 54618 45332215 ~ 45336884 (-)
G58902 NA non-coding upstream 59558 45337155 ~ 45339418 (-)
G58903 NA non-coding upstream 61903 45339500 ~ 45345259 (-)
G58904 NA non-coding upstream 95161 45372758 ~ 45373072 (-)
G58940 NA non-coding upstream 195938 45473535 ~ 45554714 (-)
AMCG00009739 NA other downstream 21180 45168941 ~ 45230457 (-)
G58653 NA other downstream 466503 44782918 ~ 44785134 (-)
G58589 NA other downstream 684803 44566069 ~ 44566834 (-)
G58584 NA other downstream 708828 44541894 ~ 44542809 (-)
AMCG00009697 NA other downstream 739388 44501787 ~ 44512249 (-)
AMCG00009748 NA other upstream 43160 45320757 ~ 45326055 (-)
AMCG00009755 NA other upstream 181146 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 360150 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 471079 45748676 ~ 45757951 (-)

Expression


Co-expression Network