AMCG00009745 (mecp2,LOC105898998)


Basic Information

Item Value
gene id AMCG00009745
gene name mecp2,LOC105898998
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45345981 ~ 45351180 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009745
GAGGAGAAGACCGAAGACCACGATCCGCAGGGCCAGAAGGACAAGGCACCGAAGCCCAAGAAGCTGAAGAGGGAGCGCCGGGATGAGGAGCAGGCGGAGCCCACGCCCTCTGCCCCGCCACCAGGCCCCGGGCccccgcagcagcagcaggtggaGCCGGAGCAGGATATGGGGGAGGCCGGCCGGGCCGAGCCCTCGGAGGCAGCAGCGGGAgcagcccccgcccccccagaGCCCTCAGCCTCTCCCAAGCAGCGGCGCTCCATCATCCGAGACCGTGGTCCCCTGTACGACGACCCCTCGCTGCCCCAGGGCTGGACGCGCAAGCTCAAGCAGCGCAAGTCCGGCCGATCGGCTGGAAAATATGACGTCTACCTGATCAAcCCAGAGGGGAAAGCCTTTCGCTCGAAGGTGGAGCTGATCGCGTACTTCCAAAAGGTAGGGGACACCACCACCGACCCCAATGACTTTGACTTCACCGTCACGGGCCGGGGCAGCCCCTCACGCCGGGAGAAGAAGCCCCCCAAGAAGCCCAAGGTGGTGAAAGCCTCGGGCCGGGGCAGGGGGCGGCCCAAGGGCAGCGGCAAGGTGCGCATAGCCTCAGAGGGGGTGGCAGTCAAGCGTGTGGTGGAGAAGAGCCCCGGCAAGCTGCTGGTCAAGATGCCCTTTGTCACACCCAAGGCGGAGGCGGGGGGGCCCTCAGGACAGGGCTCCATGGCGGCGACCAAAAAGCGCCCGGGGCGGAAGCGGAAGCACGAGCCGGACCCACTGACCGCGCCCAAGAAGAGGGGGCGCAAACCGTCTGTGCCGCCCGGGGGGGTTGTGGGGGCTGCGGGTGCGTCTGCAGCAGGGGCCGCCAGCGCCCCCAACCCCTCAGCAGCCGCCGCCGCTGCTGCCGCCTCACAAGCCGCCGAGGCCAAGAAGAAAGCGCTGAAGGAGTCTTCCGCCAGGCCGGTGCAGCAGACGGCGCTGCCCATCAAGAAACGCAAGACCAGGGAGACCGTGGAGGAGCCAGAGGCCCCCCCCCCTGCCGCCGCGGCCGGCTCTGCTGCCCCGGGCAGTGTGGTAGCGCCAGGGCCGGGGGACGAGGGGGCCAGCAGCATGGAGGCAGAGAGGGGACAGAAGCTGCCGAAGAGTCCCGGGAGGAAGCACAAGGAGGGCACGGGCAGTAGCAGCAGCGGAgggggcagcagcagccccccgAAGAGCCACAAGAAGAAGGAGCGGCCGCCGCAcaagcaccaccaccaccaccaccatcaccaccaccaccaccaacactCCCCCCCACCCGCTGCGCAGCCGCCTGCCCCGCCTCCGGCGCCGCCTCCCCCGCCCACCCTGGCGCCACCgcaccccccccagcccctccaCCAGGCCCCAGGCAGGGCGGCGCTGGGCCGGGGGGGCGCCCCGGTGCCGCAGGACAATGAGCCGCAGGACTTGAGCACCCCCAAGCCGTGCAGGGGAGACGACAAGCAgcagccgccgccgccgccagTCATCACCCGCAGAGAGCCCCCCGTCCGGCCCGACAGCTGCCCGGCGCGGGAGACGGCCGCCAAGACTCAGGGAGGGGTGGCCGAGCCCAAGGGCAAGCTCCGCGTAGGGGGGGCGGTGATGGtgggcgggggcgggggcgggggggccGAGGCAGTGGGGGAGATGAAGGACATCGTGCCCACGTCCGCCGTGCCCCGGCCCAGCCGCGAGGAGACGGTGGAGTCCCGGACGCCAGTGAGCGAGAGGGTGAGC

Function

symbol description
mecp2 Enables DNA-binding transcription factor activity. Acts upstream of or within several processes, including axonogenesis involved in innervation; sensory perception of touch; and synapse organization. Predicted to be active in heterochromatin and nucleus. Is expressed in several structures, including heart; kidney; muscle; nervous system; and skeletal system. Used to study Rett syndrome. Human ortholog(s) of this gene implicated in Rett syndrome; X-linked intellectual disability-psychosis-macroorchidism syndrome; autistic disorder; severe congenital encephalopathy due to MECP2 mutation; and syndromic X-linked intellectual disability Lubs type. Orthologous to human MECP2 (methyl-CpG binding protein 2).

NR:

description
PREDICTED: methyl-CpG-binding protein 2 isoform X1

GO: NA

KEGG:

id description
K11588 MECP2; methyl CpG binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009745 True 1755 mRNA 0.72 2 45345981 45351180

Neighbor

gene id symbol gene type direction distance location
AMCG00009744 NA coding downstream 27653 45315275 ~ 45318328 (-)
AMCG00009746 LOC105912249 coding downstream 40608 45287018 ~ 45305373 (-)
AMCG00009747 cdk20,LOC107727427 coding downstream 62961 45281202 ~ 45283020 (-)
AMCG00009741 NA coding downstream 76369 45267403 ~ 45269612 (-)
AMCG00009740 NA coding downstream 99037 45245712 ~ 45246944 (-)
AMCG00009754 NA coding upstream 46009 45397189 ~ 45402415 (-)
AMCG00009756 NA coding upstream 106632 45457812 ~ 45458370 (-)
AMCG00009767 NA coding upstream 327061 45678241 ~ 45678855 (-)
AMCG00009771 smc1a coding upstream 332380 45683560 ~ 45695262 (-)
AMCG00009770 hsd17b10 coding upstream 350753 45701933 ~ 45704510 (-)
G58903 NA non-coding downstream 722 45339500 ~ 45345259 (-)
G58902 NA non-coding downstream 6563 45337155 ~ 45339418 (-)
G58901 NA non-coding downstream 9097 45332215 ~ 45336884 (-)
G58808 NA non-coding downstream 95961 45184361 ~ 45250020 (-)
G58807 NA non-coding downstream 104048 45219629 ~ 45241933 (-)
G58904 NA non-coding upstream 21578 45372758 ~ 45373072 (-)
G58940 NA non-coding upstream 122355 45473535 ~ 45554714 (-)
G58979 NA non-coding upstream 231326 45582506 ~ 45583007 (-)
G58978 NA non-coding upstream 233623 45584803 ~ 45585371 (-)
G58982 NA non-coding upstream 240567 45591747 ~ 45629373 (-)
AMCG00009748 NA other downstream 19926 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 68384 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 115524 45168941 ~ 45230457 (-)
G58653 NA other downstream 560847 44782918 ~ 44785134 (-)
G58589 NA other downstream 779147 44566069 ~ 44566834 (-)
AMCG00009755 NA other upstream 107563 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 286567 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 397496 45748676 ~ 45757951 (-)

Expression


Co-expression Network