AMCG00009746 (LOC105912249)


Basic Information

Item Value
gene id AMCG00009746
gene name LOC105912249
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45287018 ~ 45305373 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009746
aGATCATGTCTACTCCGGGTTCCCTCGGATCCGGGACCACGGGATCGGTTCTGCAGCCCCGGTGGAAGCGGGTCCTCGGATGGTCCGGCCCGGTTCCCCGGCCGCGTCACGGCCATCGGGCGGTCGCTATCAAGGAACTGATGGTCccaCCAATCAGTGGTTCATCCCGGCGGTGCGAGGAGACATCCCCCCCGGCTGCGCGGCCTACGGCTTTGTGTGCGATGGCACGCGCCTGCTGGTGTTCGGGGGCATGGTGGAGTACGGCAAGTACAGCAACGACCTGTACGAGCTgcagGCCAGCCGCTGGGAGTGGAAGAGACTGAAGCCCAAAGCCCCCAAGAATGGACCTCCCCCCTGCCCCCGCCTGGGCCACAGCTTCTCCCTGGTGGGCAACAAGTGCTACCTGTTCGGGGGGCTGGCGAATGACAGCGAGGACCCCAAGAACAACATTCCCAGgtaCCTGAACGACCTGTACATCCTGGAGCTGCGCGCCGGCTCCAGTGTGGTGGGCTGGGACATCCCAATCACGTATGGCGTGCTGCCACCCCCCCGCGAGAGCCACACGGCCGTGGTGTACACTGAGCGCGACAGCCGCAAGTCCCAGCTGGTCATCTATGGCGGCATGAGCGGCTGCCGGCTTGGCGACCTCTGGACTCTGGACATAGACACCCTGACCTGGAGTAAGCCCTCAGTAGGCGGCACAGCACCCCTGCCCCGCAGCCTGCACTCGGCCACCACCATTGGCAACAAGTCAGTGTCCCTCTGTGacttgtctgtctttctgtctctctctcctctgtgtgatgtATGTGTTCGGGGGCTGGGTCCCTCTGGTGATGGACGATGTGAAAactCCAATGTGTGGGAGCCGGTGCTGATGGACACCCTGGAGGACAACATCCCGCGGGCGCGCGCCGGGCACTGCTCTGTGGCCATCGCCTCGCGCCTGTACGTGTGGAGCGGCCGCGACGGCTACCGCAAGGCCTGGAACAACCAGGTGTGCTGCAAGGACCTGTGGTACCTGGAGACAGAGAAGCCCCCGGCCCCGTCCCGGGTGCAGCTGGTCCGTGCCAACACCAACTCCCTGGAGGTGAGCTGGGGGGCGGTGCCCACGGCCGACACCTacctgctgcagctgcagaaGTACGACATCCCTGCCGCCACGGCTGCCACCTCCCCGGGGCTGAACGCCACGCCCTCGCTGCCCGTCAACCCGCCCAAGAGCCCCGCCCCGGCCGCCGCCGTCCCCTCGCCCTCCGCCCAGGGGCTGCCCCACGGCGGCATCACGCTGCTGCCCCAGCCCGCCTCACCCTCGCCCACCTCTGGCCTGCCCGTGCTGCCCACCATGCCCGGTAGCCCCCTGGCCGCCGCCACCGCCCGTGGCCCAGCCATCCTGAAGGTGGCCGCCCCGCAGTCCGGCACTGGCACCTCCATCGTCACGGTGCGCCAGGCCAACCAGACTGGGAAGGGCCCCATGACGGTCACCTCCCTGCCCGCCGGCGTGCGCATGGTGGTGCCGGCACAGAGCGGCCAGGGCACGCCGATGGGCAGTAGCCCCCAGATGAGCGGAATGGCGGCACTGGCTGCCGCGGCCGCCGCCACACAGAAGATCCCGCCCTCGTCGACGCCCACCATGCTGAACGTCCCGGCCGGGGCCACCATTGTGAAGACCATGGCCATGACCCCGGGCTCCACCTCGCTGCCGGCCGCCGTCAAAGTGGGCTCTCCCGTCATGGTCAGTAACCCCGCCACCCGCATGCTGAAGACTGCGGCGGCGCAGGTGGGCACGTCGGGCGCCGCGTCCCCGGGCACGCCCTCCCGGCCCATCATCACTGTGCACAAGTCCGGCACTGTCACCGTGGCGCAGCAGGCACAGGTGGTCACCACGATGGTGGGAGGTGTCACCAAGACCATCACGCTGGTCAAGAGCCCCATCAACATGCCTGGGGGCAGCGCGCTGaTCTCCAACCTGGGCAAGGTGATGTCCGTGGTCCAGACCAAACCGGTCCAGACCTCTGCCGTCACCGGCCAGGCCTCCACCAACCCCGTCACCCAGATCATCCAGACGAAGGGTCCTCTCCCGGCCGGCACCATCCTGAAGCTGGTGACCTCGGCGGACGGGAAGCCCACCACCATCATCACCACCACGCAGGCGGGCGGCGGCGGCAGCAAGCCCACCATCCTGGGCATCAGCAGCGTGTCGCCCAGCTCCGCCACCAAGCCCGgcaccaccaccatcatcaagaCCATCCCCATGTCGGCCATCATGACCCAGCCGGGGGCCACGGGTATGCTGTCAGGGGGGCGTGGAGTGACCAGCAGCCCCGGCATGAAGTCGCCCATCACCATCATCACCACCAAGATGATGACCTCGGGCACCGGCACCCCGGGCAAGATCATCACCGCTGTGCCCAAGCTGGGGGGTGGCCCGGGGCAGCAGGGGGTCACCCAGgttgTCTTGAAGGGCGCTCCAGGACAGCCCGGCACGATCCTCCGCACCGTGCCGATGGGCGGAGTGCGCCTGGTCACCCCTGTGACCGTGTCTGCTGTCAAGCCCACTGTCACCACGCTGGTCGTCAAAGGCACCACAGgagTGACGACTCTGGGCACTGTGACAGGCACAGTGTCCACCAGCCTGGCAGGGGGAAGTGTGGCCAGCGCCAATGCCTCCCTGGCCACGCCCATCACCACGCTGGGCACCATCGCCACTCTGTCGAGCCAAGTCATCAACCCGGCGGCCATCACCCCCATGGTGGTGGCCAGTCCGGCCAAGATGCAGGCGGCCGCTGCCCTGGCGGAGGTGGCCAACGGGATCGagacggcagctgggAAGCAGGACCCCACCCCAGCTCCAGTCAAGCCCCCCGTGAAGAAGGAGAACCAGTGGTTTGACGTTGGGATCGTGAAGGTCACCAACATGGTTGTCACTCACTACTTCCTTCCGCCCGAGGACGCCCCCGCCACCGACGTGAGTCTGTCCCTCCCTctaaccccccccacctccgccACCGACGTGAGTCTGACCCCCCCCAGGTGTTGGTGTGCTGaccgctgtgtgtgtgttgttgtgcaggATGACTCGGGCGCGCTCCCGGACTATAGCCAGCTGCGGAAGGTGGAGCTGCAGCCCGGCACGGCCTACAAGTTCCGTGTGGCCGGGCTGAACGCCTGTGGCCGCGGCCCATTCTCTGAGATCTCTGCCTTCAAGACCTGCCTGCCGGGCTTCCCTGGGGCGCCCTGCGCCATCAAGATCAGCAAGAGCCCGGACGGCGCTCACCTGACGTGGGAGCCACCCTCGGTGACGTCAGGCAAGATCGTGGAATACTCGGTGTACTTGGCCATCCAGAGCGCGCAGGCTGGCGAGCCCAAGGCCTCGGCGCCGGCCCAGCTGGCCTTCATGCGGGTGTACTGCGGGCCCAGCCCGTCTTGCCTGGTGCAGTCCAGCAGCCTGTCCAACGCCCACATCGACTACACCACCAAGCCTGCCATCATCTTCCGCATCGCCGCCCGCAACGAGAAGGGCTACGGGCCCGCCACGCAGGTCCGGTGGCTGCAGGAGTCCAGTAAAGACGGGTCGGCTGCAAAGCCCGCTGCCAAGCGCCCGGTGTCGTCTCCTGAAGAAAGCATCTGGTCCAAAGAAGGCGAAATCGGACCAGTGATGGACGACACGGAGCAACCTAgacttccccccaccccctcccggAACAACCGA

Function

NR:

description
PREDICTED: host cell factor 1-like isoform X1

GO: NA

KEGG:

id description
K14966 HCFC; host cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009746 True 3712 mRNA 0.67 21 45287018 45305373

Neighbor

gene id symbol gene type direction distance location
AMCG00009747 cdk20,LOC107727427 coding downstream 3998 45281202 ~ 45283020 (-)
AMCG00009741 NA coding downstream 17406 45267403 ~ 45269612 (-)
AMCG00009740 NA coding downstream 40074 45245712 ~ 45246944 (-)
AMCG00009733 NA coding downstream 163014 45120311 ~ 45124004 (-)
AMCG00009732 NA coding downstream 172133 45113433 ~ 45114885 (-)
AMCG00009744 NA coding upstream 9902 45315275 ~ 45318328 (-)
AMCG00009745 mecp2,LOC105898998 coding upstream 40608 45345981 ~ 45351180 (-)
AMCG00009754 NA coding upstream 91816 45397189 ~ 45402415 (-)
AMCG00009756 NA coding upstream 152439 45457812 ~ 45458370 (-)
AMCG00009767 NA coding upstream 372868 45678241 ~ 45678855 (-)
G58808 NA non-coding downstream 36998 45184361 ~ 45250020 (-)
G58807 NA non-coding downstream 45085 45219629 ~ 45241933 (-)
G58761 NA non-coding downstream 167794 45090217 ~ 45119224 (-)
G58724 NA non-coding downstream 286784 44998032 ~ 45000234 (-)
G58707 NA non-coding downstream 370129 44916631 ~ 44916889 (-)
G58901 NA non-coding upstream 26842 45332215 ~ 45336884 (-)
G58902 NA non-coding upstream 31782 45337155 ~ 45339418 (-)
G58903 NA non-coding upstream 34127 45339500 ~ 45345259 (-)
G58904 NA non-coding upstream 67385 45372758 ~ 45373072 (-)
G58940 NA non-coding upstream 168162 45473535 ~ 45554714 (-)
AMCG00009742 NA other downstream 9421 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 56561 45168941 ~ 45230457 (-)
G58653 NA other downstream 501884 44782918 ~ 44785134 (-)
G58589 NA other downstream 720184 44566069 ~ 44566834 (-)
G58584 NA other downstream 744209 44541894 ~ 44542809 (-)
AMCG00009748 NA other upstream 15384 45320757 ~ 45326055 (-)
AMCG00009755 NA other upstream 153370 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 332374 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 443303 45748676 ~ 45757951 (-)

Expression


Co-expression Network