AMCG00009752


Basic Information

Item Value
gene id AMCG00009752
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45437969 ~ 45453979 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009752
TCACAGCTTAAATCCAGCGTGACTCCGGAGCGGCGCTGAGCGCGGCAGCGTCACTGGGACCCGGCGGCCGAGGGGAGAGACGGTGAAACTGCTGCCCTCCTGCCGGCTGCCTGTGACTCATTTACGGAGGCGCTTTAGCGGACACCCGCGCAGTTCAGTGCTGTGCAGGACGCGCCTCAGCTCACGCTGTGTTGGGATTGGGTTGGATTTGCCGAGCTTGGCAAGACCCAGTTGCGCCGGAGTTGCTGTGCTTGTGGGTCTGGGGCCCCTGGCTGCGCGCAAGTGAACATCCTGCCGGGCGGAGGAGACATGTCCGCCCCGGACCCGCAGCACAGCGCCCAGGCCGTCCTGCTCGTCCCGCCCTCACCCGAACCGGGCCGCCCGGTACCGCCCCACCAGCAGCCCCAGGCCGTGTACGTCATTCTGGACGCCAGCTCTGACGTCAGCCTGATCAgCAGCGCCGGGGCGCCACGGTCAGCACAGCGGGGCTCGTCCTCCCCCTGGCGGCGGCCGTGGGAAGCGCGCCGGCGTCGCGTCTCTATTTTTAGCCGCCGCTGGCCGGTCGAGCTGCTTGTGCGCCACTCCGCTCTCCGACGCCGCTTCCTCGGCCGGTCCTCCGGGATTATCGCCGCCTCCCCGCCTCCAGAGATGCGTGTCTTCAGCCCCAGTGGACCCGTCCTGGAGTCCCTGCTGCCGGAGTCGGGGATCGTGGCCGACATCGACCTCGAGGACATCCTGCCCTCAGACTCCTTCTACGAGCTCAAGAGCCAGCCCGTCGCCCTCAGcccctcctcctccctttccCTGACGGTCCCCTCCACTTCCTCCCCCGCCATGACGTCCCGTGTGCTGCTCCGGCAGCAGCTGATGAGGGAGCAGGCCCGGGAGCAGGAGCGCAGGGaggcccagcagcagcagcaggccaGCTCTGCCCTGCCCCGGCCCCCTGATGCCTCCCCCGCCATCAGTGTCTCCGGCCCCTCCGCTGCCCGGCCGCCCCCGGCACAGGTGCCCGTGGAGGTGCTCAAGGTGCAGACCCACCTGGAAAACCCCACCAAGTACCACATCCAGCAGGCCCAGAGGCAGCAGGTCAAGCAGTACCTGTCCACCACTCTGGGCAGCAAGGTGGCCAGTCAGGCCCTGGGCGTGTCCCCGTCGCCCCAGTCTGGCTCGGCCCCAGAGCACAGCGCCGCGCCCAACAGCGCGCCCAACAGCCCCATGGCCCTGCTCAACCTGGGGCCCCGGTCTGAGAAAGAGATTGATGATGTCATCGATGACATCATCAGCCTGGAATCGAGTTTCAGCGAAGACATCCTGTCCTTCATCGACTCGGGGCTGCAGCTGCCCAACACGCTTCCAGTGTCGGGGAACCTGCTGGACGTGTACGATGCTGAGGCAAAAGCATTTAttaaagagagacagaagaaaGACAACCACAACCTCAttgAGAGGCGCAGGAGGTTCAACATTAACGACAGGATCAAAGAGTTGGGCACTCTCATCCCCAAGTCCAGCGACCCGGAGATGCGCTGGAACAAAGGCACCATCCTCAAGGCCTCAGTCGACTACATCCGCAAGCTGCAGAAGGAGCAGCAGAGGGCCAAGGAGGTGGAAAGCCGGCAGAAGAAGCTGGAGTTGGCCAACCGCAGCCTGCAGCTCCGAGTGCAggagctggagatGCAGGCCCGTCTCCACGGCCTGTCCACGCCGCCCTCCTCGGCCCCCCTGAGCACCGACCTCCCCCCGGGCGTGCTGCCCCCTGCCGGACCCTCCTCGGCACTGGAGCCCGCCGGCCTGCTCTCCCAATGCGGGGCCTCCCTCTCCGGCCAGCAGGGCCCCTCGCCCCCCTTCCTGTCCCCGCCGCACTCCGCCTCTCCGGGCCGCATGGCCGTGAGCAGCCCACTGGACCTGGGCGGCCTGAGCTTCGCCGAGCTGGACGACTCCAGCGCCGCGACCTTCGACACCCGGCTCATGGCGGACGTGGGGCTGGGGGACATTCTGATGGATGAGGACGGCGGCCTGTCTCCTGTGGGGGGCGCCGACCCGCTGCTGTCCTCCGTCTCCCCCGGGGCCTCGAAGACCAGCAGCCGGAGGAGCAGCTTCAGCATGGAGGAGGACTTgtgacggagagagagagacgcagaaCATGAGCTagaagaatataaatatatatatatatatatatatatatatatatatacatttatataaagatATGTATAAGTTTAGATAGATCAAAGTCAGACcggattttacatttttacttcttTTGTCCTCGTTGtgttctgttgtgtgtgtgtgtgtgtgtggtgcgtTTCTTCGCTGTGCTACGTGGTGAGAGAGTGTCGGACCAGGGCAGCCCGCAGGCGGCGTTTTGCCTCCAGGGACTCTGTTGGGTTTCAGCTCtggaaagacagacagagacgtGGGGGGTGTGATCGGAGGAGCACGTCAGTGGACATggggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgcctgacggactgacacactgagacaccgACTCGCACTCAGATCTACTGATATGTCAGTTTACTTGACTGTCCAGTGAGCGAGAGTCTGAGGGTGAAGGTTGGGGGGGGTTTATATCATTattctttacttttaaaatgttagttttaaagatctttgtataattattttattttagtattgtttAAACCAGTCctcttaatgttttttaaaagcattgtttgTGCAAAAGCAAAGTAAAGAGCTGCATCTCAGATGGCTGCAGACAGATTCCCAACGAGAACTGGGGCTCCAGAGTGTGTGCCACCCGGACCTGTGTGCACAGTGTCATGCGTGTGGGTCGTGTCAcacgtgtctctgtgtgtgcactGTGTATGTCTGCGCTGTGTCATGCATGTCTTTTGCTCAGATGTGCTGAAATAACTAATTCTCTAAGAGTACGTGTGTTATGAAAAGTCTGAACGCTCCGCCAGTTGTGTAAAGGGTGGCGCAAAAAgggatttttaatttaatcattatcCGTATATACATTCGTTATATCAGTAAATATATTATGAGCAACGTCCAGAAagggctgtgattggctgagggAGACACGAGGGGCCCAGGCATAGCCAGTGCGTGGGGGGGGGGCCAGGGGTCGGCAGCTCGCAACAGTTGTTTGCAGTCAACATCTCTGTGGGGTCATGACCTTTGTGCCGCCCTGTACAACATGAGCAGTAGCCGCACACCGTTGTTGACAGACCGAGAGGGCGGGGGGTAATGTGTGATTCTGTTATATTGGgtccctgcccccccaccgccgtgctgctgctgttacAAACGACCGACAGCTGTGAAGGAGGGGCGGGATAATGGGGGGCACAGATAGGACTGACGTTAATGCGATTTCTGCAGTTCGGAGAGGTTtctggtgtgtgtatatgtatatagatctGTACTCTTGCGTGGCCAGACTGTTATAAGTGTGTCCGGCTCCTCACTCTTCTGCGTGTGATGAGGTGTTTTGCTCTCATACTGTCCTGTCGGGGGTTGTCCCTGGTTTCCCATCATGCTCGCTGTCGTACCCCGCTCAGCTCCTGTTTTGATGGGGGTGGCACAGCTTGTTTTccctgtttgtgtattttatgattatttttttttcatgattattCTTGACGTTGGAATTCAGTCCCTCCTCCCACCGGACTCTTGCTCCCCTGACtgtccttcctcctcctcctcctcctcttaaCTGTGAGAGATAGACGTCTTTCTCCTGTCACAAGCTCTACACAGCGACAGACCCGCCACCAAATACAGCCCCCCAGCATGAGACCGCACTTCAAAAGGGAATTGATTTGATCCGTGTGTcgtcgccccccccccccaataaccTTCTTCTCTTAACTATTACTGAACAGGTGTGTTGCTCCTCACTGTCACTGTGCATGTTGTATCCGGCGGCCCGAGTCGCTGCACTGTGTCCGTCTGTCCCTCCTGTCCGTGTCTTTGTGGGATTTttcccttgtttgtttgttttttaaaagacatttttaattaaagaaaaatatatatataaaaaaataaaataaagatgaaataaagaaagaataaaa

Function

GO: NA

KEGG:

id description
K09105 TFE3; transcription factor E3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009752 True 4105 mRNA 0.57 11 45437969 45453979

Neighbor

gene id symbol gene type direction distance location
AMCG00009751 NA coding upstream 2104 45422527 ~ 45435865 (+)
AMCG00009753 NA coding upstream 41946 45390752 ~ 45396023 (+)
AMCG00009743 NA coding upstream 48256 45376438 ~ 45389713 (+)
AMCG00009749 NA coding upstream 125577 45309557 ~ 45312392 (+)
AMCG00009736 NA coding upstream 183788 45251935 ~ 45254181 (+)
AMCG00009750 NA coding downstream 12680 45466659 ~ 45476997 (+)
AMCG00009757 NA coding downstream 67374 45521353 ~ 45531436 (+)
AMCG00009763 plxnb3,LOC101165957,LOC102313277,LOC102780548,LOC102199036,LOC101474638 coding downstream 144628 45598607 ~ 45629378 (+)
AMCG00009764 LOC103384391,LOC107373447 coding downstream 189259 45643238 ~ 45647541 (+)
AMCG00009765 NA coding downstream 196105 45650084 ~ 45656237 (+)
G58821 NA non-coding upstream 39516 45339605 ~ 45398453 (+)
G58822 NA non-coding upstream 105113 45329784 ~ 45332856 (+)
G58830 NA non-coding upstream 160373 45276488 ~ 45277596 (+)
G58825 NA non-coding upstream 162936 45266939 ~ 45275033 (+)
G58792 NA non-coding upstream 239705 45194523 ~ 45198264 (+)
G58876 NA non-coding downstream 58657 45512636 ~ 45513047 (+)
G58971 NA non-coding downstream 130779 45584758 ~ 45585330 (+)
G59006 NA non-coding downstream 185656 45639635 ~ 45640037 (+)
G59026 NA non-coding downstream 219950 45673929 ~ 45674702 (+)
G59028 NA non-coding downstream 221724 45675703 ~ 45683641 (+)
G58747 NA other upstream 380095 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 677911 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 786002 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 834360 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 867438 44561777 ~ 44570531 (+)
AMCG00009761 NA other downstream 53788 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 105998 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 119291 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 122560 45576539 ~ 45584727 (+)
G59084 NA other downstream 300607 45754586 ~ 45755115 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022062 mitfb coding NC_007134.7 CM002907.2 711075 ~ 764135 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_09270527_09286978 TFE3A coding CI01000010 null 9270527 ~ 9286978 (-)