AMCG00009754


Basic Information

Item Value
gene id AMCG00009754
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45397189 ~ 45402415 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009754
CTGAAATGCATAAGTAATCGTTTTCAACAATCCACCCACACCGACATCACACTTCACGAGTGGAGCAGCAGACCCACGCCAACGGGCAATGTTTACGACAGCCCGCAGAGCAGAGCGCTTTGCCTGTGCCGACTGCTTTACGGCAGAACGTGGCCGCACAGCCTGGGAAAACATGTCGAAAGCCAAGCAGAAAAGAGCGAAGCGCCTGGGCTTGATCGGACGGAAAAAGggGAAGGATGGGGAGCAGTCGAAGGCTCCAGGAGGCAGGAAGGACCAGGGCGTCCCCAACGTGCAGCATTTCAAGCAGCGTGCCCAGAGACAGGCGGAGCTGAGGAAgaagaggctggaggagctgcaggagaaGCAGAAGGCGTCCCGGGAGAAGGAGCTGATGAAGAGGCGCAGTCTGGACGGCTTCCAGAGGGACGCGCAGCGGCGGCAACAGGAGTTCGAGCAGAAGGAATCTCAGATGCGGGGTCTGGAGAAACTCGTGAACTTCGAGACCGAGAACTCCAGGAAGGCTTACTACAGGGAATTTAAAAAGGTGATCGAGGCAGCGGACGTAGTGCTGGAGGTGCTGGACGCCAGGGACCCACTGGGCTGCCGCTGCCCCCAGGTGGAGCAGGCCGTCCTGCAGAGTGGCGCCACCAAGAGGATTGTTCTGGTGCTCAACAAGATCGACCTGGTGTCCAAGGAGATCGTGGAGAAGTGGATCAGGTACCTGAGGAATGAGTTCCCCACGGTGGCCTTCAAGGCGTCCACTCAGCAGCAGAGCAGGAACCTGAAGCGCTGCAGGGTGCCAGTGGCCCAGGCCGGTCCGGAGCTCCTGGCCAGCGCCGCCTGCGTTGGCGCCGAGTGTCTGATGCAGCTGCTGGGCAACTACTGCCGGAGCCTCGACCTGAAGACCGCCATCACCGTGGGGGTGGTGGGTTTTCCCAATGTGGGGAAGAGCAGTCTGATCAACAGCCTGAAGAGAGCGAGAGCCTGCAGTGTAGGAGCAACGCCAGGGGTCACCAAGTGTCTGCAGGAGGTGCACTTGGACAAGCACATCAAGCTGCTGGACTGCCCGGGCATCGTCATGGCCACGTCCAGCTCGGACGCCGCAATGATCCTGCGGAACTGCGTGAAGATCGAGCAGCTGCTGGACCCTGTGGCCCCCGTGGAAGCCATCCTGCGCCGCTGCAACAAGCTGCAGATCATGCAGCACTACGGGGTCCCTGACTTCCACAGCCCCCTGGAGTTCCTGGCTCTGTTGGCGCGCCGGCAGGGGAAGCTTCGCAAGGGTGGGCTGCCCGACCACGACAAGGCTGCCAGGAGCGTCCTGCTGGACTGGACAGGCGGGAGGATCAGTTACTTCACGCACCCCCCCGAGACGCACACCCTGCCCACGCACGTCAGCGCACAGATCGTGGAGGAGATGGGCCGAGCTTTCAACtgggaggagctggagaagggCAACCAGGATGCGCTGGCAGCTGTGCAGGTCAGTGACCCGGGTGCAGGGACAGGCTTCTGCATGCTCACCTCGGGCATGACCCCGGGAGGTCAGGTCCCGCCGGAGCAGGACATGGACAGCTTGGCGCAGGAGGGcgctgaggaggaagaggagaaggaagagCGGGAGGAGACCATGGAGGACGACCGAGACACGGAGTTCGGGCCGATGACGGTGCAGTTCAAGGAGGCCGGCGTGAAGGTGGGGGGGGCCGCGGTGCAGCCGGGCGCGGGAGGGAGGGCCCGGCCGCTCGCCCTGTCCCACATCCTGGAGGTGGAGCCCCTGCAGCAGGGCCAGGCGCTGCGGGCCGCCGGCAAGAGGAGGCGGAAGCAGCAGAAGAGGGCCGGTGCGCAGGATCGCCtatcctcccctctctcctcctcctgtccGTCTTCATGTTTCCTTTCCCTCCTCCTTCCATCTTGTTCTTCCCCTTCCTCTGCCAACTGGACCTCTcctactcctcttcctcctgtaCTCTTCTCCTTCTCTGGGTGTGTCAGTGATTGGTTTGGTTGCGATATCTTTTTGTAATTAACCTCAATTACCGCCAATCAGTCAATCTTCTAATGAGGTACAGACCCCCCCCCTCCATGGCCACTGGCTCGAGCTCCTCCCGGGGGCTGCAGACCCGCGCATTCAACCCCTCAGGCAGGAGCGTGGGGGGGGCTCACGCGTCTCATTAGCATCATAGTAATATGAACAGGTACGGAGCGTGACTGAGGTTGGAGCTGTTGTAATTTTTTGCCCCCCCCATCTTTCCCTCTCCAGACAAGATCGCCACCAAGCTGTCGGACTCCCTGACGTCAGCGATGAACTTCGCCTTCTCGGACAGCT

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009754 True 2332 mRNA 0.62 14 45397189 45402415

Neighbor

gene id symbol gene type direction distance location
AMCG00009745 mecp2,LOC105898998 coding downstream 46009 45345981 ~ 45351180 (-)
AMCG00009744 NA coding downstream 78861 45315275 ~ 45318328 (-)
AMCG00009746 LOC105912249 coding downstream 91816 45287018 ~ 45305373 (-)
AMCG00009747 cdk20,LOC107727427 coding downstream 114169 45281202 ~ 45283020 (-)
AMCG00009741 NA coding downstream 127577 45267403 ~ 45269612 (-)
AMCG00009756 NA coding upstream 55397 45457812 ~ 45458370 (-)
AMCG00009767 NA coding upstream 275826 45678241 ~ 45678855 (-)
AMCG00009771 smc1a coding upstream 281145 45683560 ~ 45695262 (-)
AMCG00009770 hsd17b10 coding upstream 299518 45701933 ~ 45704510 (-)
AMCG00009768 huwe1 coding upstream 303452 45705867 ~ 45738830 (-)
G58904 NA non-coding downstream 24117 45372758 ~ 45373072 (-)
G58903 NA non-coding downstream 51930 45339500 ~ 45345259 (-)
G58902 NA non-coding downstream 57771 45337155 ~ 45339418 (-)
G58901 NA non-coding downstream 60305 45332215 ~ 45336884 (-)
G58808 NA non-coding downstream 147169 45184361 ~ 45250020 (-)
G58940 NA non-coding upstream 71120 45473535 ~ 45554714 (-)
G58979 NA non-coding upstream 180091 45582506 ~ 45583007 (-)
G58978 NA non-coding upstream 182388 45584803 ~ 45585371 (-)
G58982 NA non-coding upstream 189332 45591747 ~ 45629373 (-)
G59002 NA non-coding upstream 232267 45634682 ~ 45635314 (-)
AMCG00009748 NA other downstream 71134 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 119592 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 166732 45168941 ~ 45230457 (-)
G58653 NA other downstream 612055 44782918 ~ 44785134 (-)
G58589 NA other downstream 830355 44566069 ~ 44566834 (-)
AMCG00009755 NA other upstream 56328 45458743 ~ 45465377 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 235332 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 346261 45748676 ~ 45757951 (-)

Expression


Co-expression Network