XLOC_006038 (nsmce4a)


Basic Information

Item Value
gene id XLOC_006038
gene name nsmce4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28785814 ~ 28796637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011916
GTAAAGTACACTTCCTCCTGCTCCCGCGAAAATTTCACCGTTGATGTAAATGCCGAAccttaatgtttttaaagtttAAAACCAACCAGAATCACTGAAGATGTCTGATTCAAGGAGAAGGTCCCGGGGGAATCAAGAGGAACCAGGAGGGTCAACCAATGGAGTGGGTGGACAGAACCGGCCTGAGAGATCGGGCGATGTGGGTGATGAAGATGATATTGGTGGCGGACCCTCTGGTATTAGTCAGGAAGATGATGATCCTTCACGCAGAAGAGAGATCAGGAGCAAATACAGGGACCTGATTAATGAAGTTCAGCAAAATCGCGAGGACATGTTGAATCCTGCTAACAATAAACTCACTGATGTTTTGGAAGAGGCCAACAAACTTTTTGCCAATGTGAGACAAGCTCGTGAAGCAGCTCTAGACGCTCAACTCTTGGTACTAGCCACTGATCTAGGGAAGGAGAAGGCCAGCCAGCTACATGCTGAAGGCTCTTCATTTGACCCATCTGCATTTGCAGAACATTTGTTGTCCTTTATGGATCTGAATCGTTTGGAGGATGAAAGTGGTACGGATGGAAACTTGGGGGGTTATTTACCAGGAGGAGCCTGGCTTAAGCTTGCAAAGAGAGCTGAGAACTGCTTTAGAACAGCCCCGGCTTTCCACTACATGTTGGGCTCATTTTTGGCAGAGCCTCCTCCTCCACGGCAGAGAGTTGAAAGGCAAAGAAGAGTGCCCAGCAGAGAGGAGAAACGGATTATGCCCACCCAGCTGAAGAAAATGGAAGAATCTCACCAGGAGGCAACTGAGAAAGAGGTGGAAAGGATTCTTGGATGTCTGCAAAGATACTTTAGAGATGACTCCGAGGAGCCCATTTCATATTACGAGTTCGTCATCGACCCTAACTCCTTCTCACGAACGGTGGAGAACATCTTCCACATGTCTTTTCTAATTAGAgATGGTCTGGCGAGGATGTACTTGGAGAATGGGCTTCCTTATATAGCTCCAGTAGAGGAAGGTGAGATACAGCCTGGTGGCGCTGCCATTCGACATCAGTGTGTCATCTCGATCAGCCAGGAAAGCTGGAGGGAAATCATTGATGCCTTTGACATAAAGCAAGCTCTCATCCCACCTCCATGAGCTTGGTCGCAGGAGGTCAAAAATGCCAATGACATctgtttgtaaaataaaaattgtgaaattttttatatttttaatgttttggatAGAAATTTTAAGAGTTACATATTTGGATTTTGTATTAACTGTAATAGTTGTGTTTAATACAACAAATGTAAAGcgaaattaaattttattgtgtTGAATGcaataaatttaaagtaaaactgAA

Function

symbol description
nsmce4a Predicted to be involved in DNA repair. Predicted to act upstream of or within DNA recombination and cellular response to DNA damage stimulus. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin bud. Orthologous to several human genes including NSMCE4A (NSE4 homolog A, SMC5-SMC6 complex component).

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:2001022 positive regulation of response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-111 Predicted to be involved in DNA repair. Predicted to act upstream of or within DNA recombination and cellular response to DNA damage stimulus. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin bud. Orthologous to several human genes including NSMCE4A (NSE4 homolog A, SMC5-SMC6 complex component).

Ensembl:

ensembl_id ENSDARG00000024311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011916 True 1352 mRNA 0.44 11 28785814 28796637

Neighbor

gene id symbol gene type direction distance location
XLOC_006036 si:ch211-67n3.9 coding upstream 11467 28701233 ~ 28774347 (+)
XLOC_006037 CU640488.1 coding upstream 45445 28740235 ~ 28740369 (+)
XLOC_006035 polr1c coding upstream 90890 28690355 ~ 28694924 (+)
XLOC_006034 inaa coding upstream 104778 28675686 ~ 28681036 (+)
XLOC_006033 cnnm2a coding upstream 142554 28618086 ~ 28643260 (+)
XLOC_006039 NA coding downstream 11455 28808092 ~ 28817882 (+)
XLOC_006040 CU639469.1 coding downstream 23131 28819768 ~ 28902920 (+)
XLOC_006041 ly6pge coding downstream 107322 28903959 ~ 28914437 (+)
XLOC_006042 NA coding downstream 118901 28915538 ~ 29097526 (+)
XLOC_006043 CU639469.2 coding downstream 128209 28924846 ~ 28924965 (+)
XLOC_006030 NA non-coding upstream 218328 28565179 ~ 28567486 (+)
XLOC_006027 NA non-coding upstream 302408 28475601 ~ 28483406 (+)
XLOC_006025 CR762431.1 non-coding upstream 371255 28406913 ~ 28414559 (+)
XLOC_006024 NA non-coding upstream 503491 28264236 ~ 28282323 (+)
XLOC_006044 NA non-coding downstream 286450 29083087 ~ 29083291 (+)
XLOC_006049 NA non-coding downstream 650180 29446817 ~ 29449721 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_10189922_10194006 NSMCE4A coding CI01000012 null 10189876 ~ 10194006 (-)