AMCG00009766 (srpk3,LOC107601770,LOC107674354)


Basic Information

Item Value
gene id AMCG00009766
gene name srpk3,LOC107601770,LOC107674354
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45637747 ~ 45642744 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009766
ATGTGGGTGGAGGGGTGTGGGTCCGGGGTCCTGCAGGGTCTGGACTACTTGCACACCAAGTGTAAGATCATCCACACGGATATCAAGCCGGAGAACATCCTGATGTGTGTGGATGACGTCTACATCCGCCGCATGGCCGCCGAGGCCACAGTGAGGGACAGTGATCCCACTGACCCCAAGCGGGAGACCATTGTCCAGCTGATCGACGACTTCAAGATTTCAGGGGTCAATGGAGTGCGTATCCTTCTGGGgtcccctgagagagagagcatgagagtgtga
>TU73753
GTGAGGGACAGTGATCCCACTGACCCCAAGCGGGAGACCATTGTCCAGCTGATCGACGACTTCAAGATTTCAGGGGTCAATGGAGTGCATGTGTGTATGGTGCTGGAGGTTCTGGGCCACCAGCTGCTGAAGTGGATCATCAAGTCCAACTACATGGGGCTGCCCATGCCTTGTGTCAAGAGCATCCTCCGacaggtacagcacagcactaatACGCAGCATaacagcactacagcacagctct
>TU73755
GTACAGAGagatacagcacagcacactgcggTACAGAAGGTACAGCACAGTTACAGCAGTGTTGTCCCTCCCCCAGGTCCTGCAGGGTCTGGACTACTTGCACACCAAGTGTAAGATCATCCACACGGATATCAAGCCGGAGAACATCCTGATGTGTGTGGATGACGTCTACATCCGCCGCATGGCCGCCGAGGCCACAGTGTGGCAGCAGTCCGGCGCACCCCCCCCCTCTGGGTCCTCAGGTAAAGGCTGGTTAATACTTATACATGTGTGGGCATCGTACGCAGACGGTCGCACAGCTGTCTGCTAGCACACTTGCACGTAAGGTTGACGTGTCCATAGGAGGCAGTGTTGCATTAACACTGCCATCTACAGACACGAAACCCAATTTCTATGGTGCATCTgtgattgtatggatgtaaattaacacactGTTAaagacatgttacagaaactacacgcacacacacaaatacaaattgcatcctgtatgtgtagatctatattgtcttgctatagttggctagagacttaacacaagaacataaacacacatatctGCGTATGTGCATTTATCCTGCTTATCCGttcttatgttactaaatatttgaatccaatacatatacagcatttcagctgttaaactcctcaaaattaacCGCCAGACCCGCACTTCATGTCATAGGCTTTAGcccactgaataatataataaatatagcccacaatatgggctttgtaatcaaattaatgttgattggtgaaacacgctATTTTCTACAcgtcatatattaattattatcattatttattgtattacatttgcacctgatat

Function

symbol description
srpk3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human SRPK3 (SRSF protein kinase 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009766 False 282 mRNA 0.57 3 45637977 45642744
TU73753 False 244 lncRNA 0.54 2 45637747 45638108
TU73755 True 832 lncRNA 0.43 1 45639279 45640110

Neighbor

gene id symbol gene type direction distance location
AMCG00009756 NA coding downstream 179377 45457812 ~ 45458370 (-)
AMCG00009754 NA coding downstream 235332 45397189 ~ 45402415 (-)
AMCG00009745 mecp2,LOC105898998 coding downstream 286567 45345981 ~ 45351180 (-)
AMCG00009744 NA coding downstream 319419 45315275 ~ 45318328 (-)
AMCG00009746 LOC105912249 coding downstream 332374 45287018 ~ 45305373 (-)
AMCG00009767 NA coding upstream 35497 45678241 ~ 45678855 (-)
AMCG00009771 smc1a coding upstream 40816 45683560 ~ 45695262 (-)
AMCG00009770 hsd17b10 coding upstream 59189 45701933 ~ 45704510 (-)
AMCG00009768 huwe1 coding upstream 63123 45705867 ~ 45738830 (-)
AMCG00009773 fam120c coding upstream 120433 45763177 ~ 45771249 (-)
G59003 NA non-coding downstream 2048 45635390 ~ 45635699 (-)
G59002 NA non-coding downstream 2433 45634682 ~ 45635314 (-)
G58982 NA non-coding downstream 8374 45591747 ~ 45629373 (-)
G58978 NA non-coding downstream 52376 45584803 ~ 45585371 (-)
G58979 NA non-coding downstream 54740 45582506 ~ 45583007 (-)
G59022 NA non-coding upstream 21730 45664474 ~ 45664841 (-)
G59042 NA non-coding upstream 32959 45675703 ~ 45680120 (-)
G59077 NA non-coding upstream 103197 45745941 ~ 45746254 (-)
G59090 NA non-coding upstream 104813 45747557 ~ 45748458 (-)
G59099 NA non-coding upstream 116967 45759711 ~ 45763140 (-)
AMCG00009755 NA other downstream 172370 45458743 ~ 45465377 (-)
AMCG00009748 NA other downstream 311692 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 360150 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 407290 45168941 ~ 45230457 (-)
G58653 NA other downstream 852613 44782918 ~ 44785134 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 105932 45748676 ~ 45757951 (-)

Expression


Co-expression Network