AMCG00009769 (phf8,LOC107563633,LOC106567021,LOC107716077)


Basic Information

Item Value
gene id AMCG00009769
gene name phf8,LOC107563633,LOC106567021,LOC107716077
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45748676 ~ 45757951 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009769
ATGGCGTCGCGCGGTTCTCACTCTTGTTCAAAATTGTTCCGCTTCTACGTGCGGACTAAGCGGGCATTTCGACCCTCGGAGCCCGGGACCCGCCGACTCGGGAGCCCCTCGACCCCGTCGAACCACATCTGTGATCGAAAGCTCCGTCCTCGGCTCGGTTTTGGAGAAATTCGCCATTCCCAGCCTGGGCCGTGTCGAATCCCCGTCCCCGAGTTAAGGGACAAGCCGATTCCGAGTGCTGGGCGCCCCGCAGCAGCGGAGAACTTGGAGCCGcccagtccagtccagcccggTCCAGTGAGGCCCGCCTCAGCTCAGCCCAGCGCCATGGCGTCAGTGCCGGTGTATTGTCTGTGCCGGCTGCCCTATGACGTCACGCGCTTCATGATCGAGTGTGACGTCTGTCAGGACTGGTTCCATGGCAGCGGGGCGGCGCGGGAGGCGGGACGTCCTGTGAAGACCGGCAGCCCCCAGTTTATCAGGGAGCTACGGGGACGCACCTTCCCCAGtgcggACGAGGTACTCCTGCGCCCGTCGGGGGCCCAGCTGACAGTGGAGTTTCTGGAGGAGCGCTCATTCAGTGTGCCGGTGCTGGTGCTGCGGCGCGACGGCCTGGGCATGAGCCTGCCCCCCCCCAGCTTCTCCGTCAGCGACGTGCAGCACTACATCGGAGAGGACAAGGAGATCGACGTGATCGATGTGGTGAGGCAGGCGGACCTCAAGATGCCCCTGGGGGAGTTTGTGCAGTACTACAACAGCCCCAACCGCCAGCGAGTCCTCAACGTAATCAGCCTGGAGTTCTCAGAGACGCGgCTGTCCAACCTGGTGGAGACGCCGCGCATCGTGCGGAAGCTATCCTGGGTAGAGAACCTGTGGCCCGAGGAGTCGGCGTTCGAGCGGCCCAACGTGCAGAAGTACTGCCTGATGGGCGTGAAGGACAGCTACACCGACTTCCACATCGACTTCGGCGGCACCTCCGTGTGGTACCACGTGCTGCGGGGGGAGAAGATCTTCTACCTGATCCGGCCCACTCCCGCCAACCTGGCCCTGTTTGAGCGCTGGAGCTCCTCATCCAATCAGAATGAGCTGTTCTTCGGTGACCAGGTGGACCACTGCTACAAGTGCGCCGTGAAGCAGGGCAACACGCTGTTCATCCCCACGGGGTGGATCCATGCTGTTCTGACCCCAGTCGACTGTCTGGCATTTGGAGGGAACTTCCTGCACAGCCTGAACATCGACATGCAGCTGAGGGCGTATGAGATAGAGAAGAGGCTCAGCACAGCAGACCTGTTCAAGTTCCCGAACTTCGAGACGGTTTGCTGGTACGTGGGCAAGCACCTGCTGGACACCTTCAGAGGTCTGAGAGAGAACCGGCGCCACCCGGCTGCGTATCTGGTGCATGGAGCCAAGGCCCTGAACAACGCCTTCCGCACCTGGACACGCAAGGAGGTCTCAGTGTGCCACAACACTATGCTACATGCCACGACGCACTACCACGCCCTGCCGGAGCACGAGGAGGAGATCCCAGAGACCATCAAGACACAGCAGCTGGTCAAGGAGCTGGCCAAGGAGATACGACTGGTGGAGGACATCTTCCAGCAGAACCTGGGGAAGACGGGGGGTCCGTTTGGGGGTCCGCGGGGGGTCCCCTCCCCTcaccacaccccccccccaccgcctgGCCGACCCCCTGGGAGGAAGAGGGGCCCCAAGCCAAAGGAGGGGGCGGCAGCGCTGGAGCTGCCTGCCTCCTGTCTGGACGACCTGGAGGGCAAACTGAACAAGAGCAAACTACGCCTCGTTCTGACCAACGGCAAGATCCTgggTAAAAAGGGGTCACGGTCAGGAGGTGCCACAGCCAGGTTCCAGCCCCTGACTGGTCAGCTGGAGGGCGCGGTGGGTGGGGGCAGTGACACTGAGGATGAGCTGCAGATAGACGAGACTCCCCCCCGACGGCACCGAGCGACGCCCCCCAGCAAGAAGAGGCTGGCTGGTCTGCCCAGGAAGCTGCCGCGCGCCAAGCCCTGCTCTGACCCCCACAGAGTGAGAGAGCCTGGGGAGGTGGACTTCGACATTGAGGAGGACTACACGACAGACGAGGAGGCGCTGACGCTGGCGGAGGTGAAGGCGGGGGGGCCTGGGGGGGCAGGCGGCATCCTGGATCTGCTGAAGGCCAGCAAACAGGTGGCCGGCCTGGACTGCGCAGCACTCAGTGAGGACGCTCCGGCCTCCCCCAGCACCCGTGATGCCATACAGGGCATGCTCTCCATGGCCAACccaccttcctcctcctcctctacctCATCGGGGGGTGGGGCCTCCTGGTGGGCAGGCGGGGCTGAGAAGAGCGGGGGTGGGGCGGCTGGCTCCTCCCAGTCAAAGGCGGGGCTCATCCAGAGGCCCGGCAAGCGTCCAATCAAACGGCCAGCCCGACACCACAGTGATGCAGAGGAGAGTCTGGACGAGCAGGAGACCCTGGGGACGTGCTTCAAGGACTCAGAGTTCAcGCGAGTGACCCCCACGTTACCGCGGCAGGAGCGGCCGGTGAGAGAGGGGGTGCGCGTGGCCTCTGTGGAGACCGGACTGGCTGCCGCCGCCGCCAAACTCACCCAGCAGgagCAGCAGAAATCTACCAAGAGGAAGTATGTGAAGAAGCGCgccgcccccgcccccccgccgcCGGAGCCTGCCCCTACGCCCCTGCCCCCACCcgcctcccccccacccaccgcCCCCAGCTCGCCCCCCCTGGTTGACGCGGTGGAGTGTGGGGGGGACGCGGGGGAGGAGCGCCGGCTGGACCTGTACCCCGCCAGCCTGCTGGACCACGAGTACACGGCTGGGCCGGGACCCTTCAGCCCGGGGGGGGCGCGGGGTGCGGCTGCCATGGCCCCCGGTGTCTTCCTTACCCCCCGCCGGCCCTCGCTGTCCCCCCAGAGCAGCAGCGCCCCCCCTGCCACCCCCCCGGGCAGCAGCACACAAGcagggAAACGCCCTAAAAAAGGTCTGGCGACGGCCAAACAGAGACTCGGCAAAATCCTGAAGATCCATCGGAATGGAAAACTGCtcctgtgagagagagcgagagggagagagagagagaaagtgatgAAAAGATTGAGAGGAAAGGAGATGtggggtgagggagagagagagggatagaaaGATAGAGGGAGGGTGATGTGGggtaagagagagagcaagagacgGGAGTGCACTGTGTTGTCCTACACACCTACAGCCTCCAGTTACGATCCACAGAATTGTTCTGTGggcactaacacacacacacacactttttctctccccccccttctctctctctctgtgggacCCTCGTGAATcaatggatgtttttttattttatttttctttcgaTACCTTGTACACTGTCTCTGCAATCAGtgttctgttttgtgtcttttaattaaaaatatagttttagaTGATTGTGTACATGCAGTCAGTCCGTACGGCAACATACAGATGCGCGAGTCTCCATGCTCGGtgtgctggactggactgtaccGTCAGTCTCTCGTTAGCCTGTTCTATATCTgttgtatctgtattttatgtttgatctttttttgttgtttgtttgattgttgtagttttttttttttttttttgtttgaaggTTTTTATTGTCATGTAAGTTTTAATAGCTACCACACACTCTCTCTGAGTCGGTGGAGCGACACACATACCGACTCGCACGAACTTTACTGTCTGACAatggagagcgagagagagagaattgctGTGAGtcagagaaagaaggagagagtgagagaatgtgagtgtgtgtgtgagagagaaatcTTAAATCCAAGTTATGAAGAACGGTCAGTTttgtgggagagagggagcagtcaGGACACAACGAGACGTAGAGAAGGATTATGTAACCACAAAACTCAGGCTCAAAGAGAGAGGGATACCGGTGTATAGAGTAagggagagg
>TU73855
CAAAGGCGGGGCTCATCCAGAGGCCCGGCAAGCGTCCAATCAAACGGCCAGCCCGACACCACAGTGATGCAGAGGAGAGTCTGGACGAGCAGGAGACCCTGGGGACGTGCTTCAAGGACTCAGAGTTCATCTACCCCTCCCTGGAGTCTGATGAGGAAGACCATGCCCTCAAATCAAAGGCAAAGAGAAAGAAGAACTCTGATGACACACCCTGGAACCCCAAAGcGCGAGTGACCCCCACGTTACCGCGGCAGGAGCGGCCGGTGAGAGAGGGGGTGCGCGTGGCCTCTGTGGAGACCGGACTGGCTGCCGCCGCCGCCAAACTCACCCAGCAGgagCAGCAGAAATCTACCAAGAGGAAGTATGTGAAGAAGCGCgccgcccccgcccccccgccgcCGGA

Function

symbol description
phf8 Predicted to enable chromatin binding activity; histone demethylase activity; and methylated histone binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within brain development; embryonic organ development; and regulation of neuron apoptotic process. Predicted to be located in nucleolus. Is expressed in head; mandibular arch skeleton; and tail bud. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Siderius type. Orthologous to human PHF8 (PHD finger protein 8).

NR:

description
PREDICTED: histone lysine demethylase PHF8

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0043523 regulation of neuron apoptotic process biological_process

KEGG:

id description
K19415 PHF8, JHDM1F; [histone H3]-dimethyl-L-lysine9 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009769 True 3967 mRNA 0.60 21 45748676 45757951
TU73855 False 403 lncRNA 0.63 4 45750106 45750973

Neighbor

gene id symbol gene type direction distance location
AMCG00009768 huwe1 coding downstream 9846 45705867 ~ 45738830 (-)
AMCG00009770 hsd17b10 coding downstream 44166 45701933 ~ 45704510 (-)
AMCG00009771 smc1a coding downstream 53414 45683560 ~ 45695262 (-)
AMCG00009767 NA coding downstream 69821 45678241 ~ 45678855 (-)
AMCG00009756 NA coding downstream 290306 45457812 ~ 45458370 (-)
AMCG00009773 fam120c coding upstream 5226 45763177 ~ 45771249 (-)
AMCG00009776 NA coding upstream 16918 45774869 ~ 45781213 (-)
AMCG00009777 NA coding upstream 24292 45782243 ~ 45799948 (-)
AMCG00009775 wnk3 coding upstream 43451 45801402 ~ 45811884 (-)
AMCG00009774 NA coding upstream 107949 45865900 ~ 45869735 (-)
G59090 NA non-coding downstream 218 45747557 ~ 45748458 (-)
G59077 NA non-coding downstream 2422 45745941 ~ 45746254 (-)
G59042 NA non-coding downstream 68556 45675703 ~ 45680120 (-)
G59022 NA non-coding downstream 83835 45664474 ~ 45664841 (-)
G59003 NA non-coding downstream 112977 45635390 ~ 45635699 (-)
G59099 NA non-coding upstream 1760 45759711 ~ 45763140 (-)
G59191 NA non-coding upstream 149303 45907254 ~ 45908142 (-)
G59202 NA non-coding upstream 150630 45908581 ~ 45964055 (-)
G59236 NA non-coding upstream 303542 46061493 ~ 46112681 (-)
G59244 NA non-coding upstream 364324 46122275 ~ 46175968 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other downstream 105932 45637747 ~ 45642744 (-)
AMCG00009755 NA other downstream 283299 45458743 ~ 45465377 (-)
AMCG00009748 NA other downstream 422621 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 471079 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 518219 45168941 ~ 45230457 (-)

Expression


Co-expression Network