AMCG00009786


Basic Information

Item Value
gene id AMCG00009786
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 46104136 ~ 46128356 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009786
ATGTGCCTGTCCAAGTGCCAGTCTGTGTTCCGTTCCGTCTTCCGGTCCGTCTTCCGGTCTGTGTCAGTCATGCCTGCCCAGTCCTGGGAGGCTGCAGGACTCAGAGCCCCAGGTTCCAATTCTGTCCCAGTAAATAAGGAGCCCAGGGCTGCTGGGGGGAATCCACTCTGTGTAGCCcaggtcctgcagagacactcAAGTGTCCATCACACTCTGGGTGCAGTAACACTACACCACCACAGAAGGGCAGCGGAGCACCGACTGGTCCATGAGAGCGGCAGGACAGAGTGCCTGGGCAGCCACAGTTCAGCCCGATATATGAGTCAGATGCGCAGCGAACGGTCCGGCCAGGTCCCCTCCTCACAGACAGGGGGAGCCAGCGAGCCACAGTGCTCCTTCCCTGGACCCCCGGACAGAGATCCCGCAGACAGGACCCTCTCCACACCCTGCCACCGCTGGGACTGCGACCAAGGGCTGCCATCGGCGTCTCTGGCCTCTTCACCCGCAGCGGGACTCAGCAGTGACCCTTCACAGGAGCCGAcacccCAGTGCGCCATGTTGTCAGATGACACACTGGAGGAGTGCAGGATCGACGGGGACGAGGGCATTGTGACACGCTCCAGTGCCCCCGGCTCACTGCCTGCTGAGCCGCTCCCCAAACCCGACCCCCGAGACCCCCGGGGCGTGGAGTTCAGCGATGTTCTGGGGGAGCCGGCGTCCTTCCACAGTTTTGACCGCGTGTGGACGTGGAGCGACATGCTGTTCGAAGCGACGCGGCTGTGGTGTTACCGTGGCGTGTCCCTGCTGTGCGCCGTGGATTTCTCAGAGGTGTTCTTCGAGCCCGCAGGCCCCAGCACCCTGGAGCTGGTGTGGACCCTGTCCCAGCGTGTGTTCAGCGGCTCACAGCCCTTCTGCTACATGGTGTTGTCCACGCTGTGCGCGCTGCCCCTGGCGCTGCTCTGGGGGGCCATGTTCGCCTGCGCTGCCTTCTGCCAGGTGTGGGCAGGCGGGCCGTGCGGGCGGGGCTGGGGGGTGGGCGTGTACTGGGTGCGCTCGGTGAGGGAAGTCAAGGAGggaaagtttaataaaatgtga
>TU73959
ggggggggggggggggggggggGGGCGTGTACTGGGTGCGCTCGGTGGTGACGCTATGCCTGCGCCCAGTCTTCGACCCCCTGTTCAGTGCCATGGCGACAGCCTGCACCGGCCTAAGCATCACCATGGGCAAGAACAGATAGAGTCTGACGAACTGACCCCGGTACTGACACgtcaacacactgacacagatacactgacgcactgacacgtcaacacactgacacagacacactgacgcactgaccCCGGTACTGACACgtcaacacactgacacagacacactgacgaACTGACCCTGGTACTGACACGTCAACACACTGACCCTGGTACTGACACgtcaacacactgacacagacacactgacgaACTGACCCCGGTACTGACACGTCaacacactgacgcactgacactgacacgtcaacacactgacgcactgacacGTCAATACATTGACATAGACACACTAACCACCTGACCGTGGTACTGACACGTCACTACACTGAGacagacacactaacacactaaCGCACTGACACCGATGCTGACACatcaacacactgacacagacacactgatgtACTGACACCGCTACTGACACgtcaacacactgacacagacacactgacacagacacactgacacagacacatctAGATCcatacactgacacattgacacaaCTGGAACCACGTCCTAACACAGTCACTGACAGACTGGTTGCTCTGTTGCTGTGCTGTAACAGCACTGTCCTACTGTATTGCACTTACTGCAGCCCCTACTGTAACAGccctattctactgcactgttactacagccccctattgtaccagcactattctactgcactgttactacagccccctactgTACCAGTACTattctactacactgttactacagccccctactgtaacagcactattctactgcactgcactgtctACTGTATTGTGCTTCTCTGTGAAGTGTGTTCTGACAGAGGGAAGTCAAGGAGggaaagtttaataaaatgtgattgattgat

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009786 True 1095 mRNA 0.64 7 46118522 46128347
TU73959 False 1027 lncRNA 0.52 2 46104136 46128356

Neighbor

gene id symbol gene type direction distance location
AMCG00009780 NA coding upstream 182792 45919431 ~ 45921344 (+)
AMCG00009778 NA coding upstream 190948 45904887 ~ 45913188 (+)
AMCG00009772 NA coding upstream 225121 45875633 ~ 45879015 (+)
AMCG00009762 NA coding upstream 443650 45656761 ~ 45660486 (+)
AMCG00009765 NA coding upstream 447899 45650084 ~ 45656237 (+)
AMCG00009785 NA coding downstream 76752 46205108 ~ 46217730 (+)
G59142 NA non-coding upstream 75167 46028695 ~ 46028969 (+)
G59128 NA non-coding upstream 229704 45874123 ~ 45874432 (+)
G59091 NA non-coding upstream 340998 45759675 ~ 45763138 (+)
G59087 NA non-coding upstream 345867 45757110 ~ 45758269 (+)
G59086 NA non-coding upstream 347366 45756252 ~ 45756770 (+)
G59169 NA non-coding downstream 41405 46169761 ~ 46187549 (+)
G59180 g6pd non-coding downstream 62290 46190646 ~ 46195343 (+)
G59179 NA non-coding downstream 90725 46219081 ~ 46220515 (+)
AMCG00009781 NA other upstream 81952 46000042 ~ 46022184 (+)
AMCG00009782 LOC108266008,LOC103385383 other upstream 106426 45944632 ~ 45997710 (+)
G59084 NA other upstream 349021 45754586 ~ 45755115 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other upstream 519409 45576539 ~ 45584727 (+)
AMCG00009760 NA other upstream 528172 45573270 ~ 45575964 (+)

Expression


Co-expression Network