G48618


Basic Information

Item Value
gene id G48618
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 94649 ~ 97129 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60756
agaagggagaaagggagaatAAAACCCAAAACTCAAATAACCGCAAAAATATACACTAtctcacgcacacacatcaAAACTAAGGTACTTTTTTGTAGTGCATATATAGTGGCAGCTATAAACTACAGCTCCCAGCATGCAACAGTCCTGAGATCAGGAAGCAGATCCATGATGCTCTATATGGGCAGTATTGGGGTATTTGTAGATTCTCTGAAACACTGTAAGTCAGTGGATCTCAATCCCGGACTGCTGTTTCGTGTTCTATCTGAGCTCTCTATTACTGAATTACTAGCagggtacttaattgaaccataaTTTAACTAATCATTTGCCTAATCGGAGATCTTAACATGAACTCTACAATggtttaaaatcatttaattatgaaactgtagatggaacttaaaaatactattttattgggtgtagtattttacattgacataaaaacaattcaattttttaatacttatgattaaactTGGAacttaaaaagtcaaatgaagcaaattagttcaattaagtaccctgctagtaattcagtaattgagagctcagatAGAACATGAAactgagagcttggttggaatgAGAACCACCAGGGTAGGGGCTCCCCAGGATGGGGTTGAGATCCAGTGCTGTAATTATAAAGGACTGGTCAGTACACTGGTGCATATGTGCAGGACTGGTCAGCACATTGGAAGGGACATTGAAAAAGGGTGAGAGAATCACTGCCCAACTTCACTGCAGAGTCTACACTGGCGCTCCTGCAGCAGTGCAGGGCTTTACAaccagtgtgtgcgtgtgtgtggcatgtatgtgtgtctatatgtgcatttgtacagcatatatatactgtatatacagccATAAATACAGCACGCATAGGCAGAGTGTGAGCTGCCCCTTGTTATCGTTGTTGTGATTGTGAATGCTTGTTTTTACACAGGAATGTACAATTCAGAATTGTTAGGCTGTGGTGCcttgttttatttctaatatatattgcttaatgCTTgcttgtaaaatgcatgcttactatacagagacagacagacagacagacagataaaattgtctatctgtctgtcgaTCTGTCTGTATTTGGGCAGTACTGATCCTAACCAAGAGGTCTGCCAGTCCTGCCTTCCTGAGTCTAGAAGACGGTGCCACAACCTCCCTATTGGTGCCAGGCAGTGGGCAAAGGGAGTgtggaggtcagaggtcagggaaGCAGGCTCATGAGTCGCTCTGAACAGAGTGAGAGTGAGCCCTGTCACACGCTGGGGCCCCAATCCCTCTCCAGGGCCCAACCAGCGCCCAGAGTGGGAGCCTTGGCAGAAAGACGTCTGGCTCTCTGGGGTGATGATGTCACAGGAGAAGAAAGGATGAGACGTCTGGCTGGGGCAGGAAAACAGGAGAGAGGCAGGAGTCTGGAGCTAactgccccctcccccagccaCCAAGCTGTAACTTACTAGCTGATACACCGATACACTGTCTAACTATACAATGAGTAActgattgattattattgttattatttattcgCAGACACAGTTTggcagggtgacttacagttgcaaaataaacattctgaAAACATTACAGGAAGTGCAGGAAATCAGTAGAAAATGCCATAAGCATACAATACTGATAACATTgattcactgactgactgactgacacagtgactgaaggataactcactgactgactgacacactgactgactgacacactgactgaatgactgactgaatgatacactccctgactgactgactgactgacactgactgaatgatacactccctgactgactgactgactgactgactgaaTGATACACtccctgactgacacactggctgactgactgatgcACTGAATGACTGGACAGTGAGTGGACAGGGCAGTGTCCAGAAGAAGGGAATGGAGCTCCAGCTGAGTGACCCTCAGTCCTGCCCCTCTCCTGGGCCCTGTCTTGTATAGTCTCTCATTCGCCTCATTAACCCCTGACCTGCCTGCACTGTCACAGCTGGCAATAATGAAATACAAGGTCCAATTAACCAATTTGAGTTAATTAGGCTGTGAAGCACTGCCCTAAATATAAtgaggctgtgctgctgtcattggatttgtattattttattattgctacTTTCATATGTATTTTGGCTCTGATTACAGTACTGTAAGGATGactggttgatttatttttgtttgggttCTGGAATATAAAGAATTTTATCCATATATCTGTACAGtgtcagtgtatatatacaatattattattactaatagtatactgtatatatcttgtttttatttatcttagaATGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60756 True 2349 lncRNA 0.42 2 94649 97129

Neighbor

gene id symbol gene type direction distance location
AMCG00008363 NA coding upstream 23899 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 36775 55562 ~ 57874 (+)
AMCG00008361 NA coding upstream 50874 41639 ~ 43775 (+)
AMCG00008368 NA coding downstream 440 97569 ~ 111307 (+)
AMCG00008367 cacna1ab coding downstream 29927 127056 ~ 127729 (+)
AMCG00008371 NA coding downstream 117516 214645 ~ 218875 (+)
AMCG00008372 trmt1 coding downstream 137766 234895 ~ 243054 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 156350 253479 ~ 256222 (+)
G48631 NA non-coding downstream 107352 204481 ~ 204901 (+)
G48636 NA non-coding downstream 124924 222053 ~ 222787 (+)
G48637 NA non-coding downstream 128136 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 154178 251307 ~ 252482 (+)
G48716 NA non-coding downstream 160453 257582 ~ 258264 (+)
AMCG00008369 NA other upstream 88 87317 ~ 94561 (+)
AMCG00008375 cacna1a other downstream 56060 153189 ~ 204395 (+)
AMCG00008376 NA other downstream 163145 260274 ~ 263022 (+)
G48811 NA other downstream 376616 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 420370 517499 ~ 525325 (+)
G48846 NA other downstream 490151 587280 ~ 588446 (+)

Expression


Co-expression Network