G48631


Basic Information

Item Value
gene id G48631
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 204481 ~ 204901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60776
cctGGGTTTCCGTTTCTCTTTCTCATTTCTGTTACTCAAACACCGACACATAACTCCCCCCGGAAGCGCACGACAACGAGGGAAGTTCACCAAGAGAACGACAAACGTCTCTCACCACACTGGCGCCACGCACAGCTCCCCTTCCaccagtgtgtgagagtgtgagtgagggtgagtgagagagggtgtgagtgtgagagtgtgtgtaagtgtgtgtgtgtgagtaagtgagagagtgtgagtgttgAGAGTGAGTATGTGTGTTAGTCAGCTGTGGCTCTGGGACGATCACACTAAGAAGacagaggaaggaaggaaggagagaaaaagaaagaagaagaactGGAGGCGCGTCTCTGCTGCTCTGTGGGGTGCCGTGGGGGGCAGTGTGGACTGTGGAGAGCAGGGCAGGGGAGCGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60776 True 421 lncRNA 0.54 1 204481 204901

Neighbor

gene id symbol gene type direction distance location
AMCG00008367 cacna1ab coding upstream 76752 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 93174 97569 ~ 111307 (+)
AMCG00008363 NA coding upstream 133731 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 146607 55562 ~ 57874 (+)
AMCG00008361 NA coding upstream 160706 41639 ~ 43775 (+)
AMCG00008371 NA coding downstream 9744 214645 ~ 218875 (+)
AMCG00008372 trmt1 coding downstream 29994 234895 ~ 243054 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 48578 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 64859 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 103085 307986 ~ 311984 (+)
G48618 NA non-coding upstream 107352 94649 ~ 97129 (+)
G48636 NA non-coding downstream 17152 222053 ~ 222787 (+)
G48637 NA non-coding downstream 20364 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 46406 251307 ~ 252482 (+)
G48716 NA non-coding downstream 52681 257582 ~ 258264 (+)
G48720 NA non-coding downstream 59119 264020 ~ 264390 (+)
AMCG00008375 cacna1a other upstream 86 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 109920 87317 ~ 94561 (+)
AMCG00008376 NA other downstream 55373 260274 ~ 263022 (+)
G48811 NA other downstream 268844 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 312598 517499 ~ 525325 (+)
G48846 NA other downstream 382379 587280 ~ 588446 (+)
G49013 NA other downstream 671653 876554 ~ 879513 (+)

Expression


Co-expression Network