G48636


Basic Information

Item Value
gene id G48636
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 222053 ~ 222787 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60784
tattcagatttttttaatagttttttttttagtttttttgtctttttattatttttttacagtagttAATGTgcaattatctttattattggGTCACAGTTAGGAATTCACAAAGTTATTGGCACTttgaacacagaataaacactgGCGATACAGGGTCACAGCGGCTGGAGCTTCAGTGGACGCTACTGCATTGCTTTGAAAAAGCGTTTCTGGATTAATACCTCATGCTGTGAGAGCACACCTAACAATCAAACTTCATTAGTGCTTCTatgtataatatacagtatatatatatagagagagtgaAAAAGACCTGCAGACCCCAGAGCAACAGAGACCTGCACctctgctctttctctctctctcaaactccCCCCCATCCTGCTGCTCCAAGTCAGGtttgctttttctgtttcttttgaatTTGCAAAACAAGTCAAAGGAATCCTAACTGAAAAccatgggagagagagagagggtctcGCTCTCTGTGCCCAAGCAGGACGGGGTAGTAAGACCAGTGAAgaagacaggagaggagagggaagccTGGggctgtggggtggggggggctcaATTAAAACGGACACCTGCCagtgcaaagagagagagagagagaggggggggccGGGGCAGACTGCAGCATCTCCTCTTACGGCTCCGGGGTCGGGATTACAGCGGATATTTAGTTGGGCTCTGGATAGGA
>TU60785
TTTTTGTTACAAACTTTTTATTAagatattcagatttttttaatagttttttttttagtttttttgtctttttattatttttttacagtagttAATGTgcaattatctttattattggGTCACAGTTAGGAATTCACAAAGTTATTGGCACTttgaacacagaataaacactgGCGATACAGGGTCACAGCGGCTGGAGCTTCAGTGGACGCTACTGCATTGCTTTGAAAAAGCGTTTCTGGATTAATACCTCATGCTGTGAGAGCACACCTAACAATCAAACTTCATTAGTGCTTCTatgtataatatacagtatatatatatagagagagtgaAAAAGACCTGCAGACCCCAGAGCAACAGAGACCTGCACctctgctctttctctctctctcaaactccCCCCCATCCTGCTGCTCCAAGTCAGGtttgctttttctgtttcttttgaatTTGCAAAACAAGTCAAAGGAATCCTAACTGAAAAccatgggagagagagagagggtctcGCTCTCTGTGCCCAAGCAGGACGGGGTAGTAAGACCAGTGAAgaagacaggagaggagagggaagccTGGggctgtggggtggggggggctcaATTAAAACGGACACCTGCCagtgcaaagagagagagagagagaggggggggccGGGGCAGACTGCAGCATCTCCTCTTACGGCTCCGGGGTCGGGATTACAGCGGATATTTAGTTGGGCTCTGGATAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60784 False 709 lncRNA 0.45 1 222079 222787
TU60785 True 735 lncRNA 0.44 1 222053 222787

Neighbor

gene id symbol gene type direction distance location
AMCG00008371 NA coding upstream 3178 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 94324 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 110746 97569 ~ 111307 (+)
AMCG00008363 NA coding upstream 151303 60289 ~ 70750 (+)
AMCG00008362 clpp,LOC107590418,LOC107753176,LOC106606781,LOC107724426 coding upstream 164179 55562 ~ 57874 (+)
AMCG00008372 trmt1 coding downstream 12108 234895 ~ 243054 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 30692 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 46973 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 85199 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 104836 327623 ~ 340268 (+)
G48631 NA non-coding upstream 17152 204481 ~ 204901 (+)
G48618 NA non-coding upstream 124924 94649 ~ 97129 (+)
G48637 NA non-coding downstream 2478 225265 ~ 225944 (+)
G48647 wdr83 non-coding downstream 28520 251307 ~ 252482 (+)
G48716 NA non-coding downstream 34795 257582 ~ 258264 (+)
G48720 NA non-coding downstream 41233 264020 ~ 264390 (+)
G48721 NA non-coding downstream 43787 266574 ~ 266881 (+)
AMCG00008375 cacna1a other upstream 17658 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 127492 87317 ~ 94561 (+)
AMCG00008376 NA other downstream 37487 260274 ~ 263022 (+)
G48811 NA other downstream 250958 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 294712 517499 ~ 525325 (+)
G48846 NA other downstream 364493 587280 ~ 588446 (+)
G49013 NA other downstream 653767 876554 ~ 879513 (+)

Expression


Co-expression Network