G48647 (wdr83)


Basic Information

Item Value
gene id G48647
gene name wdr83
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 251307 ~ 252482 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60796
ctttcatacttttttccctcactgtatgtgtatgagtgtgtgtgtgacactgtaTGTGTGTCATGTTATCACTTCTAGTATATTATCTGCTTGTTATTATAGACACTCACTATCATTTATAACATCATTTCAAACTGTGCTtgtctctgcctcctctccgttccctcctcttcttctttctcctctctcctcctcctcttcctctccgtTCCCTCCCCCTCAGGCCCCATCACCTGTGTGTGCTTCAGTCAGGACGGCCAGTGCACCCTGAGCTCCAGCCTGGACTCCACCCTGCGGCTGCTGGACAAGAGCACGGGAGAGCTGCTGGGGGAgtaCACTGGACACAAGAACAGCGCCTACAAGCTGGACTGCTGCCTGTCTGAGAGGGACACTCACATCCTGAGCTGCTCTGAGGACGGACACGTGTACTTCTGGGACCTGGTGGAGGGATCTCTGTCTCTGAAGCTGCCGGTTGGAAAAGCAGTCGTCCAATCACTGTCATTCCACCCGTCTGAGCCCCGCCTCCTGACTGCCATGGAGGGGTGTGTCCAGATATGGGGGGTGGAGtctgaggacagtgaggggacaGGGGTGTGATCAGGACATAAACCCCGCCTCTCTGCTGGATTGACAGCAGGAGGTGTAGTCTAACTGCACAGACTGGAGTACAATGGAAAAACATGAGAAATACGgactctgattttttttttatatatatattttttacattttaatgcttCTACAGTCATTTTGGTTctgtaaataaaacagtttttaacacaaacagtTCTGATGTTGCTTTTAATGGAATCACCAGTTGCCAGTTTGGACCCAGCAGCTGTAAATCAGCCTCCAGTCTGACAGGCACGACGCACCCAGCACAGTTACACACAGCCGGTCCAGGCTAGGAGCACGATGTCACTGATCCAGCCAGAC

Function

symbol description
wdr83 Predicted to be located in cytoplasm. Is expressed in lens and solid lens vesicle. Orthologous to human WDR83 (WD repeat domain 83).

NR:

description
PREDICTED: WD repeat domain-containing protein 83

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60796 True 936 lncRNA 0.50 3 251307 252482

Neighbor

gene id symbol gene type direction distance location
AMCG00008372 trmt1 coding upstream 8253 234895 ~ 243054 (+)
AMCG00008371 NA coding upstream 32432 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 123578 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 140000 97569 ~ 111307 (+)
AMCG00008363 NA coding upstream 180557 60289 ~ 70750 (+)
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding downstream 997 253479 ~ 256222 (+)
AMCG00008373 LOC104964355 coding downstream 17278 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 55504 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 75141 327623 ~ 340268 (+)
AMCG00008389 NA coding downstream 89280 341762 ~ 344446 (+)
G48637 NA non-coding upstream 25363 225265 ~ 225944 (+)
G48636 NA non-coding upstream 28520 222053 ~ 222787 (+)
G48631 NA non-coding upstream 46406 204481 ~ 204901 (+)
G48618 NA non-coding upstream 154178 94649 ~ 97129 (+)
G48716 NA non-coding downstream 5100 257582 ~ 258264 (+)
G48720 NA non-coding downstream 11538 264020 ~ 264390 (+)
G48721 NA non-coding downstream 14092 266574 ~ 266881 (+)
G48796 NA non-coding downstream 175399 427881 ~ 488584 (+)
G48803 NA non-coding downstream 186501 438983 ~ 444637 (+)
AMCG00008375 cacna1a other upstream 46912 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 156746 87317 ~ 94561 (+)
AMCG00008376 NA other downstream 7792 260274 ~ 263022 (+)
G48811 NA other downstream 221263 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 265017 517499 ~ 525325 (+)
G48846 NA other downstream 334798 587280 ~ 588446 (+)
G49013 NA other downstream 624072 876554 ~ 879513 (+)

Expression


Co-expression Network