G48716


Basic Information

Item Value
gene id G48716
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 257582 ~ 258264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60881
CGGGCTCGCACTACAGCCGCTGTGCATAGCGGCGTCTTCGGCACGCAGCGTGCTGATGACGTCAGACCTACGCGCCGGAAGAAGGGGGTCCTTTAGTGACCGGCCGGTGGGGGGCAGAAAATCCATCTGAATATCAGTTTATAATGTGTTCAACGACACATTGACGTCCGCAATTTCTAGTTCTGATGGACGGGTTCTGAAGCGCGATTACACACGAccacactgactggactgccATCAGTCCGCTTggctcactgacacacacgaCTCGGACAACGATGGCAGCGTAACTGGATACAGCTCATTCACAGGTATGTTCAACATGACAACACAGTAGAATAGCGCGGCGACAGtagggctgtagtaacagtgcagtagagcagtgctgggacagtaggggctgtagtaacagtgcagtagagcagtgctgggacagtaggggctgtagtaacagtgtagtagagcagtgctgGGACGgtaggggctgtagtaacagtgcagtggaatagtgctgttacagtaggggctgtagtaacagtgtagtagagcagtgctgggacagtaggggctgtagtagaatagtgctgttacagtaggggctgtagtaacagtgcagtagagcagtgctgttacagtaggggtctgtagtaacagtgcagtagaatagtgctgggacagtaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60881 True 683 lncRNA 0.53 1 257582 258264

Neighbor

gene id symbol gene type direction distance location
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding upstream 1360 253479 ~ 256222 (+)
AMCG00008372 trmt1 coding upstream 14528 234895 ~ 243054 (+)
AMCG00008371 NA coding upstream 38707 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 129853 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 146275 97569 ~ 111307 (+)
AMCG00008373 LOC104964355 coding downstream 11496 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 49722 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 69359 327623 ~ 340268 (+)
AMCG00008389 NA coding downstream 83498 341762 ~ 344446 (+)
AMCG00008385 NA coding downstream 94302 352566 ~ 358341 (+)
G48647 wdr83 non-coding upstream 5100 251307 ~ 252482 (+)
G48637 NA non-coding upstream 31638 225265 ~ 225944 (+)
G48636 NA non-coding upstream 34795 222053 ~ 222787 (+)
G48631 NA non-coding upstream 52681 204481 ~ 204901 (+)
G48618 NA non-coding upstream 160453 94649 ~ 97129 (+)
G48720 NA non-coding downstream 5756 264020 ~ 264390 (+)
G48721 NA non-coding downstream 8310 266574 ~ 266881 (+)
G48796 NA non-coding downstream 169617 427881 ~ 488584 (+)
G48803 NA non-coding downstream 180719 438983 ~ 444637 (+)
G48806 NA non-coding downstream 198385 456649 ~ 458299 (+)
AMCG00008375 cacna1a other upstream 53187 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 163021 87317 ~ 94561 (+)
AMCG00008376 NA other downstream 2010 260274 ~ 263022 (+)
G48811 NA other downstream 215481 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 259235 517499 ~ 525325 (+)
G48846 NA other downstream 329016 587280 ~ 588446 (+)
G49013 NA other downstream 618290 876554 ~ 879513 (+)

Expression


Co-expression Network