G48720


Basic Information

Item Value
gene id G48720
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 264020 ~ 264390 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60887
cctggctcagttttgtcctctttcttgtggattgggatgacatttgctgtcttcaggtcagttggcacatcccctgttctaagtgtcatttggaatatttgacttagcgacctatacataatttccctcatttcttcgtttctctttcacacacacacacacacacacgcacacacacactctctgcctctcacatacatacaaacatacacacagactctCACTCACACAACACATTGATGTTTACACTCACAACACACAGACGATACACAGtcacgcacacgcgcacacatgTTGTGCAGGGGAGGAGCAGGCCACGGGCCACAGTGATGTTTCTGTGTAATGCAGTCCTGTTGTAAATACCTGATTCA

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU60887 True 371 lncRNA 0.46 1 264020 264390

Neighbor

gene id symbol gene type direction distance location
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding upstream 7798 253479 ~ 256222 (+)
AMCG00008372 trmt1 coding upstream 20966 234895 ~ 243054 (+)
AMCG00008371 NA coding upstream 45145 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 136291 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 152713 97569 ~ 111307 (+)
AMCG00008373 LOC104964355 coding downstream 5370 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 43596 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 63233 327623 ~ 340268 (+)
AMCG00008389 NA coding downstream 77372 341762 ~ 344446 (+)
AMCG00008385 NA coding downstream 88176 352566 ~ 358341 (+)
G48716 NA non-coding upstream 5756 257582 ~ 258264 (+)
G48647 wdr83 non-coding upstream 11538 251307 ~ 252482 (+)
G48637 NA non-coding upstream 38076 225265 ~ 225944 (+)
G48636 NA non-coding upstream 41233 222053 ~ 222787 (+)
G48631 NA non-coding upstream 59119 204481 ~ 204901 (+)
G48721 NA non-coding downstream 2184 266574 ~ 266881 (+)
G48796 NA non-coding downstream 163491 427881 ~ 488584 (+)
G48803 NA non-coding downstream 174593 438983 ~ 444637 (+)
G48806 NA non-coding downstream 192259 456649 ~ 458299 (+)
G48818 NA non-coding downstream 224235 488625 ~ 489866 (+)
AMCG00008376 NA other upstream 998 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 59625 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 169459 87317 ~ 94561 (+)
G48811 NA other downstream 209355 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 253109 517499 ~ 525325 (+)
G48846 NA other downstream 322890 587280 ~ 588446 (+)
G49013 NA other downstream 612164 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 701448 965838 ~ 968583 (+)

Expression


Co-expression Network