G48721


Basic Information

Item Value
gene id G48721
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 266574 ~ 266881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60888
Tctgcagtccagtcagtgactctacagtccagtccagtcagtgactctgcagttcagtccagtcagtgactctgcagttcagtccagtccagtcagtgactctacagtccagtccagtccagtccagtccagtcagtgactctgcagtccagtccagtcagtgactctacagtccagtccagtccagtcagtgactctacagtccagtccagtccagtcagtgactctgcagtccagtcagtgactctacagtccagtccagtcagtgactctgcagtccagtccagtcagtgactctacagtccagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60888 True 308 lncRNA 0.54 1 266574 266881

Neighbor

gene id symbol gene type direction distance location
AMCG00008374 mri1,LOC107594353,LOC107703717,LOC107700835,LOC107709591,LOC106595636 coding upstream 10352 253479 ~ 256222 (+)
AMCG00008372 trmt1 coding upstream 23520 234895 ~ 243054 (+)
AMCG00008371 NA coding upstream 47699 214645 ~ 218875 (+)
AMCG00008367 cacna1ab coding upstream 138845 127056 ~ 127729 (+)
AMCG00008368 NA coding upstream 155267 97569 ~ 111307 (+)
AMCG00008373 LOC104964355 coding downstream 2879 269760 ~ 273986 (+)
AMCG00008386 NA coding downstream 41105 307986 ~ 311984 (+)
AMCG00008384 NA coding downstream 60742 327623 ~ 340268 (+)
AMCG00008389 NA coding downstream 74881 341762 ~ 344446 (+)
AMCG00008385 NA coding downstream 85685 352566 ~ 358341 (+)
G48720 NA non-coding upstream 2184 264020 ~ 264390 (+)
G48716 NA non-coding upstream 8310 257582 ~ 258264 (+)
G48647 wdr83 non-coding upstream 14092 251307 ~ 252482 (+)
G48637 NA non-coding upstream 40630 225265 ~ 225944 (+)
G48636 NA non-coding upstream 43787 222053 ~ 222787 (+)
G48796 NA non-coding downstream 161000 427881 ~ 488584 (+)
G48803 NA non-coding downstream 172102 438983 ~ 444637 (+)
G48806 NA non-coding downstream 189768 456649 ~ 458299 (+)
G48818 NA non-coding downstream 221744 488625 ~ 489866 (+)
G48830 NA non-coding downstream 285586 552467 ~ 554260 (+)
AMCG00008376 NA other upstream 3552 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 62179 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 172013 87317 ~ 94561 (+)
G48811 NA other downstream 206864 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 250618 517499 ~ 525325 (+)
G48846 NA other downstream 320399 587280 ~ 588446 (+)
G49013 NA other downstream 609673 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 698957 965838 ~ 968583 (+)

Expression


Co-expression Network