G48803


Basic Information

Item Value
gene id G48803
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 438983 ~ 444637 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60985
gtgttttttcaaaaaAATCCTGAGGTATTCACAATAAAAtgtcactttcttttctttttttccccaaaatattAAGGAAAATGAgacaaaaggggaaaaataaaataaaaataataatacaaaaaaataaaaataaaccccaaaaataattcaaaggtCAAAAGCGTATCGATGTGACAAGACATTAAAGCTGCACGATGTCTTACAGAGTCCGACACACAGGAGCCATGTCAGGCAGACCTCCCGACACGTTAACACTTAGACTCCTGCAACTTCTAAAGTGAAGCGTTGCTGTCGCCCCCCCACCCTGTCCATCGACCCCTCCCATTTGATCTGAGTGGAGCCCCGCCTCTTTGGGGGAGGGGCGGTTAACAGGCGCTTCTATTGGTTAACGAGTGCTGCAGTGCAAAGCTGCATCAGCCAATCCGCGGAAACCTTCGAAGACGAGGATGAGGACGATTGGCTCACTTTGGACACAACAGGACAAccttattgttgttgttgctgctgtctGGACTAGTACTGCTCTGGCCAAAGTATCGACTACTGCACAGGACACAGAGGAGGTACGGCTAGCAACAGGAGCtccttaattggttaattggagagaggagggggaaaaagagtgagagggagggatcgagagcaagagagagagggcagaaaGAAGGGGGAGGGAAGATAGTGGTACCCAACCCTGGCCCAGGAGGACCCCCTACtctgatgttttttgttccaaaccaagctctcaatgacttaattgaacccttaattgaagtaacaatctgcttagattttgagtattaaaagagttggttcattgtgttatttatacaatcctatacttcacttaaaacccctactgtttaaaataattaaaaggctctgatttagcaaattattggttcaattaagggttcaattaagtaattgagagctgggttggaacaaaaaccagcagggtaggggttcctacaggaccagggctgggagcCTCTGCTCTACACAACCTCATGGAGGACAGACAGCCGGGTAATTAGGGGACACGACCTGCGATCGCACTGGCCAGTCACACGCTCCCCTGGTGTACTGGAGACCAGCACAGTCCCAGTCCAGCTCAGAGGGAGGAAGACGGGGCAGGGAGGAGGCGGCCTGTGTGCTCTGCAGTGCGTCGCACTCGCTCTCCCAttatctgtgtctctctgttacGCACACGCATGTGCTCGCTCTCTGCCACGCACACGCACCGCTGCCCTCACATCTGACACTGGGTGATCTTTTCTAGTTTTAACTTGTATCGTTTttttctatacatatatatatatttttttgcttttgctttttgaatAACTCTTCTCTAGTCATTTGTATTGCAGCTGTGATGTTTTTGACCAAAAGTCACTTTGGATAAAAagcatgagaaaaacaaataagttacacaataaataacaatgagaacaacaacaacaacaataataatataataatagtgATCGTAAGAACAATACCATGCAAGGCCTGTctgcaggagcaggagcaggtgTGTGAAGTGTGGGGGCAGCCAGACAGGACACTGACGGTCAAGCGAAGGTGTACGTGGTGGACGGGGCATTGCTATGGAAGCGAggcagtgagagtgtgtgtgtgagtgtgtgcgtttgtgtgtacgtgtgcgtgtgtgtgtgtgtgtgtgtgcggtgggggaggagagagagagagagagagaaccctCTTTCACTGCAGTCTCTACAGAGCATTGCCGAGGGGGTAGTCAGCTCTTGAGCCGGACCCGGtgtgctctcgctctctctctcgctctctccccctgcagACAGAGGGAgtctctcttttccttttttctcattgtctgtctgtctgtgtttgtatttggtGTTTTCTCTTGCCCTGAATAGAACATTacgaagaaaaataaacataataatttaaaaagaaatgacaAATCAATATGAACTGAgggacactgacacacacactcactcacacaggtCTGTACTAGTATATCAGACACACATCCATTCGAGCAGAAACTACACTTCTcacaacaacaatcataatGGGAACAGacagaacaataataatcatcaatataaaaatcaatattgcAAATAGCGGATCAATCAATCAGAGAGTTCAGAGACGGGAGGAGGTCAAggctccccctctcctctctctcctgcaatACACATTCCATCaatttgcaaaaaatatatatatataatatatatgtgtgtgtaaaaattataaataaagattGACACTTTgtgcccctcccccccaaaagaaaacaaaaaaaatgcagttacaTCCATTATTATAACAACATGCAACTGATATACTTACAGCATGGTACTATTACCCCAGCTACCCCAGACACCCCACAGACCCACCCTTACAATCCTTATCATTCAGGACGCCTCTCCCTCAGTCGCTCTCAGCAGAGGGGGAGGAGGCCCTGTACGTTCTGACAGTGAAacgagagagggaggaggagggagagagggagggagggagccgATGTCAGGGTAATTCCGCGCAGGATCAATCTGCCCCAGTCTGTCTGCATCTCCGCTTCGTTCAGACACGATCGCTGCCCGCAGCTCTGCACTACTAACTGCTAACatccaattatccaattaagGAGTTGGCTGGCAGGAACGGAGTCACACTGTGATCGAGTCCGGGTTGGGTGGGGTAATTTAATTAGGTAACAATTTAGGTGTTTATGTTCAGGGTGCGAGGGACAGCAACCTGCTGTGCCCATGATCATCGAGCAGCTCCCAGCTAtgttctctctccatctctgttttCCTGTAACAGTGCAGCCCAACTCCAGGTCCTgaggtgggggggaaggggaggggaaaGTGTCTTCTGGTACCTTTGTTCCACCTGAGCTgttcattacttaattgaattgacAATGGGGGCCTAATAGAAGCAGGACCTAGCCCTTCCCCACCGATTTAATTGTATCgtcttaattgatctaattggCTGAACTGGGCTCGCAGTGCTACCCCCCTGAGGGTCTCTGCTcccggacacacagacagacagagacagtgctAAAGACACACAGTAACAACAGTATCGCCCgcaccctccccctcccccatggCTAATCTatagatttgtatatatatcatcatcagaagaagaacaataatagatttttttgtgtgttttttctgttgacaCCTTTGGTGTATAACGTCacgccccccccgccccctcacTGGTTTAGCTTCAACAGGTTCCACCCCCCCGCccgacaggcaggcaggcaggcagacagacagacaggcgtCACCCCGCCTCACTTACACAACAACGagcaaataaatagaaatacagTTTCATTTAGAAAAAACCCAAACGAACACATcgtgaggagggggaggaggaaggtGGCAGTGAGAGGTGATGACGCAACACCCGCCTCCCCGGCCGTGCCCTACAGACTGAACTCAGAGCgcagagacggacagacagacgcacagacagTCCAGCACTCGTGTTGCTGTAGTTTGACAGACAGTCCAGTTTACAATCAGCCGGTCAAATATTTCACACACAGTACAGGGGCTCCAGTGAGCCGGGGCTCCTCCCACTCACCACAAGCCCCTCCCACTCCAACTTCTACTTTCTCTGCCTtcattccctctccctccctctccatcaCATTCTGCTTCTCTGTTCTCCTCTCCATGCACactcctcctccatctccacCCATCCACTTATCCATTCCATATTCTTACTGTTTCCcactttttctttgctttttctcttgcctgttctctctctatctcctgCTAATCCTCCCCTCTACCAACATGCTACATCCCTTCatccctccttcctctcctgCAGATGATCTGTCAAACCAAGGTTCAGCGACTAGGTAAAAATGAATAGAGGAGGTAGAaatcaagagaaagagagagagggcaggagggaagtgggagagggagaaggatgaATTCAGTGACAGAAAAAAGTGTGAGATTGAAAGAGTGGAGAGGCACAGAGGGAAACAGCACTTCAGGGACACAGTGACCCCCTATTCTTTCACTGCCTGTCTCCTGTGAACAGAGCGGTAGTGACAgcctgcctctccctctctctctctggtcagTCAGGTGATAATCTGACACTACATTAATACTTTTTGtatcattataattacactCTCTCTCCAGTCACAGTTATTATCAGCAGGCAGGAGTCTGGGCACTTAGTGACACAAACCTCCTGCATAAACCGaaattctctccctctctctacctACCTTTACCATCAGATTAACATCAGCAGTGCCGTGATGACACTAGGGGTGCAGGAGCCACTGTGTGTGTAGACAAGAGCAcagcatatacacacacctgtactatacacacacatctgtactgaggtgtatatacatacatacATACATGTACtacacacacctgtactgtagtgtattgtatatacacacctgtactacacacacacacacacacctgtactgaggtgtagtgtatatacacacctgcactacacacacacacctgtagtgtaatgtatacacacacctgtactgaggtgtagtgtatatacacacctgtactacacacacacacctgtactgaggtgtagtgtatatacacacctgTACTAGTGTATACACACCAGACtttactatacacacacacctacactgtagtgtatatacacacctgtactacacacacacctgtactgtagtgtatatatacacacctgtactacacacacacctgtactgtatatatacacctgtaccacacacacacctgtactgtagtgtatatatacacctgtactacacacacacacacctgtactgtaGCATATATACACAACTGTACTACACACACCTGTACtttagtgtatatatacacctgtactacacacacacacctgtactgtagtatatatacacaactgtactacacacacctgtaatgtagtgtatatatacacctgtactatacacacacacacacctgtactgtaGCATATATACACAACTGTACTACAAaaacatgtactgtatatatacacctgtactacacacacacacacctgtactgtagtgtataCATACTGGACTTtactacacacacacctgtactgtagtgtattgtGTTATTCAGCATCTATCGGGTATCAGACAGCAGCACTATAACAGCgtgtctgtgagtctgtctgCTGGCATGGGGGGCATTcctctcttcatctctctcctctcccagccACCGTGGGCCGCcggtctgcctgtctgtccttccctctctctctccctccctccatccctcgcTCTCCGCTCCTGGCTACCTGCTGAAGAGCGAGTGCAGGTGCGTCTGGCTGTACAGCTGGCTGGTGCGCGGTGACTCTGTGCGCTCCATCACGTCCTGGAACCACCCAGCCACGTCCACCTCCGTCACCTCGTACCGACGGATGAAACTGTGctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60985 True 5519 lncRNA 0.47 3 438983 444637

Neighbor

gene id symbol gene type direction distance location
AMCG00008391 NA coding upstream 11638 425827 ~ 427345 (+)
AMCG00008390 evi5l,LOC108428244,LOC103150094,LOC106922548,LOC108258486 coding upstream 24051 389608 ~ 414932 (+)
AMCG00008385 NA coding upstream 80642 352566 ~ 358341 (+)
AMCG00008389 NA coding upstream 94537 341762 ~ 344446 (+)
AMCG00008384 NA coding upstream 98715 327623 ~ 340268 (+)
AMCG00008396 NA coding downstream 49603 494240 ~ 506457 (+)
AMCG00008395 NA coding downstream 62306 506943 ~ 509857 (+)
AMCG00008402 NA coding downstream 95476 540113 ~ 541044 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding downstream 164396 609033 ~ 629437 (+)
AMCG00008410 NA coding downstream 264611 709248 ~ 712619 (+)
G48721 NA non-coding upstream 172102 266574 ~ 266881 (+)
G48720 NA non-coding upstream 174593 264020 ~ 264390 (+)
G48716 NA non-coding upstream 180719 257582 ~ 258264 (+)
G48647 wdr83 non-coding upstream 186501 251307 ~ 252482 (+)
G48637 NA non-coding upstream 213039 225265 ~ 225944 (+)
G48806 NA non-coding downstream 12012 456649 ~ 458299 (+)
G48818 NA non-coding downstream 43988 488625 ~ 489866 (+)
G48830 NA non-coding downstream 107830 552467 ~ 554260 (+)
G48915 NA non-coding downstream 185247 629884 ~ 632393 (+)
G48921 NA non-coding downstream 196239 640876 ~ 691037 (+)
AMCG00008376 NA other upstream 175961 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 234588 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 344422 87317 ~ 94561 (+)
G48811 NA other downstream 29108 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other downstream 72862 517499 ~ 525325 (+)
G48846 NA other downstream 142643 587280 ~ 588446 (+)
G49013 NA other downstream 431917 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 521201 965838 ~ 968583 (+)

Expression


Co-expression Network