G48811


Basic Information

Item Value
gene id G48811
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 473745 ~ 551906 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60995
CACCTCAGAAAACACTCGGAATCAAttctatttgtgttttaataagatGTCATCCAGGAACAAAATACTACATATTTCAATGacatataaacatgtataaaatgaCACGTCAAATATTCGATTTTGCAGCCAAGCGCAGGTTGTTCTGCCGAGCCGCAGAAATCCTTCGCTCAGTTATCCGACTGTCTCCTCAGAGCGCCGCAGCGGTCTGTCCTGGGCTTCCCTCCAGTGGACTGACTCGGGCACTGCAGCGTGAACTCCAGTGGGGACAgtgtgtgtgtgtgtgtgtgtgtcagggtccTCTACGTCTTCTTGGCCGCGCTGTGCCTCTGTGCCGGCTCTCCACTCTTCAGCACACTCAGTCTCTTGTGCATCGTGGCGCTGGCCCTCTGCGTCACTTCCTGCTCGATGTGAGTCCGGATTGCCACCTCCAGGGTCTTCTTCAGCTTGTACTGTTGGACCACCTGGGCTTTCTTCGGGACGATGACTCTCCCTCCTTTCTTCGGGCCcttgtgtttgtgctgctgcGGCGCCTTCTTCCCTCCGGGGCGCTGTGCCTTGAACTTCTGTTTCCCCTGCGCCATCTCGACTTCTCCCCCGCCAATGGAACTGTGGGATACAG
>TU60996
GTCAACACGACGTGAATAAACAAACGGCTTGGCCAGTCCAGGAGATCAGGGGCCTCTGGGAGGAGCTCTGACATCACTGGGACTCCTACCccacgcagacagacagacagacagacagggacgTGGGGGACAGTGGGGACAGTGGGGACAGTGGGGACAGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagggtccTCTACGTCTTCTTGGCCGCGCTGTGCCTCTGTGCCGGCTCTCCACTCTTCAGCACACTCAGTCTCTTGTGCATCGTGGCGCTGGCCCTCTGCGTCACTTCCTGCTCGATGTGAGTCCGGATTGCCACCTCCAGGGTCTTCTTCAGCTTGTACTGTTGGACCACCTGGGCTTTCTTCGGGACGATGACTCTCCCTCCTTTCTTCGGGCCcttgtgtttgtgctgctgcGGCGCCTTCTTCCCTCCGGGGCGCTGTGCCTTGAACTTCTGTTTCCCCTGCGCCATCTCGACTTCTCCCCCGCCAATGGAACTGTGGGATACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60995 True 622 TUCP 0.54 4 550281 551906
TU60996 False 524 lncRNA 0.59 4 473745 551906

Neighbor

gene id symbol gene type direction distance location
AMCG00008391 NA coding upstream 46400 425827 ~ 427345 (+)
AMCG00008390 evi5l,LOC108428244,LOC103150094,LOC106922548,LOC108258486 coding upstream 58813 389608 ~ 414932 (+)
AMCG00008385 NA coding upstream 115404 352566 ~ 358341 (+)
AMCG00008389 NA coding upstream 129299 341762 ~ 344446 (+)
AMCG00008384 NA coding upstream 133477 327623 ~ 340268 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding downstream 57127 609033 ~ 629437 (+)
AMCG00008410 NA coding downstream 157342 709248 ~ 712619 (+)
AMCG00008412 NA coding downstream 164189 716095 ~ 719874 (+)
AMCG00008411 NA coding downstream 223485 775391 ~ 778431 (+)
AMCG00008418 atp13a1 coding downstream 233520 785426 ~ 799063 (+)
G48806 NA non-coding upstream 15446 456649 ~ 458299 (+)
G48803 NA non-coding upstream 29108 438983 ~ 444637 (+)
G48721 NA non-coding upstream 206864 266574 ~ 266881 (+)
G48720 NA non-coding upstream 209355 264020 ~ 264390 (+)
G48716 NA non-coding upstream 215481 257582 ~ 258264 (+)
G48830 NA non-coding downstream 561 552467 ~ 554260 (+)
G48915 NA non-coding downstream 77978 629884 ~ 632393 (+)
G48921 NA non-coding downstream 88970 640876 ~ 691037 (+)
G48947 NA non-coding downstream 142562 694468 ~ 696113 (+)
G48961 NA non-coding downstream 196692 748598 ~ 750602 (+)
AMCG00008376 NA other upstream 210723 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 269350 153189 ~ 204395 (+)
AMCG00008369 NA other upstream 379184 87317 ~ 94561 (+)
G48846 NA other downstream 35374 587280 ~ 588446 (+)
G49013 NA other downstream 324648 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 413932 965838 ~ 968583 (+)
G49208 NA other downstream 770905 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 1073388 1625294 ~ 1628333 (+)

Expression


Co-expression Network