G48915


Basic Information

Item Value
gene id G48915
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 629884 ~ 632393 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61127
CAGATGTGaacttcattttgtttttaataaaaatgaacaacaacacaaataaaacaagactAGAGAAGCGTGCAGCAGCTCGACGCCCCCCCGGTCCTCAGCACAGGAACGAGAGCCGGTCAGCGGAGAGGAGCCGACGGACGAGCAGCCGGGGGTCCGGGGGTCCGTCTGTCCACTCACAGCACGATCCAGGTGTAGCGGTCACTGTCGGCCAGCACCTTGAGAGACGAGCCTGAAATACAGAGCAGCCTGTCAACACCGCACCACAActacacaacacagtacaacaacaggacaactacaacaacacaacaacagcacagcactacaacaacagcacagcactacaacaacacagcacCACAACAACANNACAGCACAACAACAGGACcactacaacaacacaacaacagcacagcactacaacaacacagcacaacaacaggaccactacaacaacacaacaacagcaccacaacaacacaacaacaacacagcacagcacaatacCACAGAACCACAGCACTAAGCACGTCGGGAACACAGCGTTACAACACATCAGTAgagtgttcagtgtgtttgtgtgttcagtacctgtgtgcagtgtgttcacAGGGCTCCCACTCATTGTTACCAATGAAATTCCAAAGCTCTTCCTTGACTTTTTACCAAATTTCCATGACTAGACACGTGCATTGAAACGAGGCAGCCACTGGGATGTCACGGGCTTTTTGACACTAAAGCCTTCGTAGCAGCGCCATGTTGCATGTAGCAGCCTGGCAGTGTCTTCATGCGTGTGCCCATGTGCCCGACAGATGCTGGCGGTTAAAGAAGTATTTATACTTAATACAACTGACCAGTTTTTAGTGACCCCTGCCCCTGGTCTCAGGAGAGGGATCCGGCGCTCATGAGGCGTGTTGTTGTGGCGCGGCCCACAGCGCGTCACATCAGAAGTGAAGCCCGACACACTACTGTGTCCCAGACTGAAGTGCGTACACGAgcaggacagacagacgcacTGCTGTGGGCGCGGCCGTCTGTTTCAGGATTCGTTTAGATTTAAGATGTACGTGAACAAGGAGCTGACTAACACAATGAACAGGCCAGGAGAATCGCAGGCCAGTTTTAAATGTCCTGTAAAATGACTTTTCCAAAACTTTATAGATATTTAATgaaatttcaaaacatttccagtTTTGGAAAACGAAATTTAAATTCCATAACTTTTCCAGGATTTCCACGACCAGTGGGAACCCTGTGTGCAGTAACTTTGCGCAGTGTGTTTAGTGTGCAGTACCTTTGTGCAGCGCCTCGTTGGTCATGCGGTTGATGTATCGGGAGCTGCTCTCGGGCACCAACCACTTCATCACTGTGTTCACACACGACTTCCTGTACGAGCTCCACACACTGCCGCTGAGACAGAGACGCACGGGTTACACAcgggttacacaca
>TU61128
CAGATGTGaacttcattttgtttttaataaaaatgaacaacaacacaaataaaacaagactAGAGAAGCGTGCAGCAGCTCGACGCCCCCCCGGTCCTCAGCACAGGAACGAGAGCCGGTCAGCGGAGAGGAGCCGACGGACGAGCAGCCGGGGGTCCGGGGGTCCGTCTGTCCACTCACAGCACGATCCAGGTGTAGCGGTCACTGTCGGCCAGCACCTTGAGAGACGAGCCTGAAATACAGAGCAGCCTGTCAACACCGCACCACAActacacaacacagtacaacaacaggacaactacaacaacacaacaacagcacagcactacaacaacagcacagcactacaacaacacagcacCACAACAACAGGACcactacaacaacacaacagcacagcact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61127 True 1453 lncRNA 0.49 3 629884 632393
TU61128 False 403 lncRNA 0.52 2 629884 630313

Neighbor

gene id symbol gene type direction distance location
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding upstream 447 609033 ~ 629437 (+)
AMCG00008402 NA coding upstream 88840 540113 ~ 541044 (+)
AMCG00008395 NA coding upstream 120027 506943 ~ 509857 (+)
AMCG00008396 NA coding upstream 123427 494240 ~ 506457 (+)
AMCG00008391 NA coding upstream 202539 425827 ~ 427345 (+)
AMCG00008410 NA coding downstream 76855 709248 ~ 712619 (+)
AMCG00008412 NA coding downstream 83702 716095 ~ 719874 (+)
AMCG00008411 NA coding downstream 142998 775391 ~ 778431 (+)
AMCG00008418 atp13a1 coding downstream 153033 785426 ~ 799063 (+)
AMCG00008417 NA coding downstream 174366 806759 ~ 813360 (+)
G48830 NA non-coding upstream 75624 552467 ~ 554260 (+)
G48818 NA non-coding upstream 140018 488625 ~ 489866 (+)
G48796 NA non-coding upstream 141300 427881 ~ 488584 (+)
G48806 NA non-coding upstream 171585 456649 ~ 458299 (+)
G48803 NA non-coding upstream 185247 438983 ~ 444637 (+)
G48921 NA non-coding downstream 8483 640876 ~ 691037 (+)
G48947 NA non-coding downstream 62075 694468 ~ 696113 (+)
G48961 NA non-coding downstream 116205 748598 ~ 750602 (+)
G48996 NA non-coding downstream 133478 765871 ~ 783981 (+)
G49066 NA non-coding downstream 297313 929706 ~ 930827 (+)
G48846 NA other upstream 41438 587280 ~ 588446 (+)
G48811 NA other upstream 77978 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other upstream 104559 517499 ~ 525325 (+)
AMCG00008376 NA other upstream 366862 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 425489 153189 ~ 204395 (+)
G49013 NA other downstream 244161 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 333445 965838 ~ 968583 (+)
G49208 NA other downstream 690418 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 992901 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 1298261 1930654 ~ 1936502 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1421657 NA non-coding NC_048581.1 CM023235.2 12598916 ~ 12604920 (-)