G49101


Basic Information

Item Value
gene id G49101
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1058561 ~ 1107290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61376
CTCCCAGTAATTTATTGCATTcgaaagggaaacaaaaagaCCAACTCTAAAGTGACAACTTTTATTAGACATGGGGAAACTGGCAGTGCTAAGACTACTGCGTACAGGGAAGGAAGAGACTGAAGCAGAGGTCATCGCAGGACAGCCTAACAAGCTACAAGTGTGAACTggatctgtgtgtgtccctcagGCCGTGACGGGTCTTAACTGGAGCTGCGGCAGACTCGGTGTCGGGGTCTTGAGAGGCATTTCTAATTCCCACGTTGATTCATGCACGTGTGCTGTGTTGCTCCTATCAGAGGTGTAGGCAGCCTGGTCTCCCAGCATCCTCCTGGTCTGTCTGTTACTTCCTGTTATGGCCTGTTGTGGCGTTAGTGCGGGGACAGTGGAATTGTGGGTAACTGGCCAATCCGCTATCAGAGAAAACAGAGAGACTACAAGACTGTCCAGGCAGCTGCTTCGATTACCAAGCTGGTGCAGATACAGATGTTCTTCTGATTGCGGTTGCGAATGTTTACAGGGcacttaaaacacaattacagaaacaaatctaATTCAGAGTAATTAGACAGAAGTCTGAGAAACGGTTGCAGCAATTTAGAAAGACCCACGGAGCCGTGTGAGCTGGATTTAAAAAGCTTGGGGCGAACCCGTCAGAGCAGGGCTGTCTGGTCCAATCAGTGCTGTAATGACTTAATTGGAGCCttgattgcttaattggacctactgctgcagctgctgcaattaacggaggaagagggggaagaaaaactTGCAGTGGAGTAGGAGGCTGGCTGATCCCATTGTGGGGCTGAGAGGAGCAGGCGgagtgagtgaggaggagaggaggccCCTTctgcacatctctctctctctctctcccctcctctgtCACTCGGACCCGGGCTCGGCGTGCTGGATGGCCGTGCTCAGGAGGAGGTAGGCGGGGGGCAGACCGGCTCCCCCTGGGTCACGTACCACACTTCACGCCGAGCC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU61376 True 996 lncRNA 0.52 2 1058561 1107290

Neighbor

gene id symbol gene type direction distance location
AMCG00008432 NA coding upstream 2806 1052595 ~ 1055755 (+)
AMCG00008430 NA coding upstream 25250 1010395 ~ 1033311 (+)
AMCG00008431 xab2 coding upstream 63742 985977 ~ 994819 (+)
AMCG00008424 NA coding upstream 74905 976227 ~ 983656 (+)
AMCG00008429 NA coding upstream 107719 947657 ~ 950842 (+)
AMCG00008441 NA coding downstream 132074 1239364 ~ 1245755 (+)
AMCG00008445 NA coding downstream 150231 1257521 ~ 1260216 (+)
AMCG00008446 NA coding downstream 173338 1280628 ~ 1288082 (+)
AMCG00008444 col5a3,LOC106593482 coding downstream 208317 1315607 ~ 1322747 (+)
AMCG00008447 NA coding downstream 336887 1444177 ~ 1444458 (+)
G49069 NA non-coding upstream 122280 933145 ~ 936281 (+)
G49066 NA non-coding upstream 127734 929706 ~ 930827 (+)
G48996 NA non-coding upstream 274580 765871 ~ 783981 (+)
G48961 NA non-coding upstream 307959 748598 ~ 750602 (+)
G48947 NA non-coding upstream 362448 694468 ~ 696113 (+)
G49178 NA non-coding downstream 55193 1162483 ~ 1162690 (+)
G49221 NA non-coding downstream 399423 1506713 ~ 1506935 (+)
G49233 NA non-coding downstream 522650 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 535140 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 692571 1799861 ~ 1856256 (+)
AMCG00008423 NA other upstream 89978 965838 ~ 968583 (+)
G49013 NA other upstream 179048 876554 ~ 879513 (+)
G48846 NA other upstream 470115 587280 ~ 588446 (+)
G48811 NA other upstream 506655 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other upstream 533236 517499 ~ 525325 (+)
G49208 NA other downstream 215521 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 518004 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 823364 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 955266 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 981190 2088480 ~ 2107792 (+)

Expression


Co-expression Network