G49107


Basic Information

Item Value
gene id G49107
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1086570 ~ 1087158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61383
cGTCCTTACACTGAAGTTGTAGGAGCTGTTGACTTTTTGCAGGGGGAACGTCATCTTCTGGACCTTCTCCGCCCGATTAggggtttcagttttctgttccGGCTTCTTGTCTACCTTCTCCTTGGCAGGTTCTGCATTCTTGTCCTCAGTCCCAGTCTTACTCTCCGTCACTCCCCCCTTTGTCTCGTCTTTAGCGTCATCTGCTGGACGTGGATCAGGGCCTTCCCTCCTTCTCCTGCTCCCCTGAGCAGTGGTGGTCCCCTCCGCTGTCTTCGGCGGCCCGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61383 True 286 lncRNA 0.56 3 1086570 1087158

Neighbor

gene id symbol gene type direction distance location
AMCG00008433 NA coding upstream 8174 1076130 ~ 1078396 (+)
AMCG00008432 NA coding upstream 30815 1052595 ~ 1055755 (+)
AMCG00008430 NA coding upstream 53259 1010395 ~ 1033311 (+)
AMCG00008431 xab2 coding upstream 91751 985977 ~ 994819 (+)
AMCG00008424 NA coding upstream 102914 976227 ~ 983656 (+)
AMCG00008441 NA coding downstream 152206 1239364 ~ 1245755 (+)
AMCG00008445 NA coding downstream 170363 1257521 ~ 1260216 (+)
AMCG00008446 NA coding downstream 193470 1280628 ~ 1288082 (+)
AMCG00008444 col5a3,LOC106593482 coding downstream 228449 1315607 ~ 1322747 (+)
AMCG00008447 NA coding downstream 357019 1444177 ~ 1444458 (+)
G49102 NA non-coding upstream 18537 1063549 ~ 1068033 (+)
G49069 NA non-coding upstream 150289 933145 ~ 936281 (+)
G49066 NA non-coding upstream 155743 929706 ~ 930827 (+)
G48996 NA non-coding upstream 302589 765871 ~ 783981 (+)
G48961 NA non-coding upstream 335968 748598 ~ 750602 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding downstream 5563 1092721 ~ 1096634 (+)
G49178 NA non-coding downstream 75325 1162483 ~ 1162690 (+)
G49221 NA non-coding downstream 419555 1506713 ~ 1506935 (+)
G49233 NA non-coding downstream 542782 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 555272 1642430 ~ 1741577 (+)
AMCG00008423 NA other upstream 117987 965838 ~ 968583 (+)
G49013 NA other upstream 207057 876554 ~ 879513 (+)
G48846 NA other upstream 498124 587280 ~ 588446 (+)
G48811 NA other upstream 534664 473745 ~ 551906 (+)
G49208 NA other downstream 235653 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 538136 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 843496 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 975398 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 1001322 2088480 ~ 2107792 (+)

Expression


Co-expression Network