G49178


Basic Information

Item Value
gene id G49178
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1162483 ~ 1162690 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61466
agaacataagacagtgtccagtcgagaggaggccattcgccccatcgtgctcgtttggtgtccattaataactaagtgatcaaggatcctatccagtctgtttctgaatgttcccacattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtctcgaatgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61466 True 208 lncRNA 0.48 1 1162483 1162690

Neighbor

gene id symbol gene type direction distance location
AMCG00008433 NA coding upstream 84087 1076130 ~ 1078396 (+)
AMCG00008432 NA coding upstream 106728 1052595 ~ 1055755 (+)
AMCG00008430 NA coding upstream 129172 1010395 ~ 1033311 (+)
AMCG00008431 xab2 coding upstream 167664 985977 ~ 994819 (+)
AMCG00008424 NA coding upstream 178827 976227 ~ 983656 (+)
AMCG00008441 NA coding downstream 76674 1239364 ~ 1245755 (+)
AMCG00008445 NA coding downstream 94831 1257521 ~ 1260216 (+)
AMCG00008446 NA coding downstream 117938 1280628 ~ 1288082 (+)
AMCG00008444 col5a3,LOC106593482 coding downstream 152917 1315607 ~ 1322747 (+)
AMCG00008447 NA coding downstream 281487 1444177 ~ 1444458 (+)
G49097 NA non-coding upstream 44703 1080021 ~ 1117780 (+)
G49101 NA non-coding upstream 55193 1058561 ~ 1107290 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding upstream 65849 1092721 ~ 1096634 (+)
G49107 NA non-coding upstream 75325 1086570 ~ 1087158 (+)
G49102 NA non-coding upstream 94450 1063549 ~ 1068033 (+)
G49221 NA non-coding downstream 344023 1506713 ~ 1506935 (+)
G49233 NA non-coding downstream 467250 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 479740 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 637171 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 641135 1803825 ~ 1806027 (+)
AMCG00008423 NA other upstream 193900 965838 ~ 968583 (+)
G49013 NA other upstream 282970 876554 ~ 879513 (+)
G48846 NA other upstream 574037 587280 ~ 588446 (+)
G48811 NA other upstream 610577 473745 ~ 551906 (+)
G49208 NA other downstream 160121 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 462604 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 767964 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 899866 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 925790 2088480 ~ 2107792 (+)

Expression


Co-expression Network