G49211


Basic Information

Item Value
gene id G49211
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1321891 ~ 1324269 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61502
TTTACTTTAACAAAATGACTTTATTTCAATTCGTactcatttgatttttttttacaaatacaattcttaTTCAGGCAACAATGGTTGAGTTTTGTTCGCTTGTTGTTCTTAAAGACTTaactgtacagtatataaaattaGTACCACAGATACGCTATACAAACAGGGttttggggggcagggggaggaTTGAAGCTGTACTGCTTGAGATGCTGATAGTTTTATTGTGTAGCAGTGGGGAATACGGGCTCGGATCATCCTCTCGCAGTCTGAGAGATGATCGGGAAAGAGACCTTTAATTGCACTTTGCTATTATGTACATACTTGCAGTGGCACGAGTCGCCAGGCCATCGCGGTGCTGTACGGATACTATGTACAGAATGGGGTTCAGGTTAGGCTAGCACACACGcaacaaactaataaaaataacacaaatgtaaCAATCTGTAGATCAGCAAAAGTAACCCAACCGTATGTCttagtgttttattaaacatgataGTGCATAATATTCATCTACATCAGTACAGAGCATGCCCACACAGTTAAACGGGACCGTAGttaacagacacacaatacagcacTTTTACAGCACGTAATGAAGGCCGTTTTCCTGTATTGCTGCTGACAGAATCCATGGCGGTCGGAGGGGCGTCTCACTGTGCGTCCGTGCCCATGGCTACAGATTTAAATAGTGGGATCGATTCCCCAACTCGAGTATTCCTTGTATTAGCACCAGAATATCTGCTCTCGGGTCAGAGGTTCCCAGCGACAAATGTAAACATAGAATCGAGGAAGATACGAAAATCAAAAAGGTGTTTCTGTGCAGAGAGGTTTTTAGGCCACAGGCTCCTGCTGCAACATGTAAGTCAGTGATAGAATTAGATGATATAGAGAATCTAACGGAATGAATGAATTACAGAACAATATTTTTCGTGAGGGTTAAAATCTGTGTTTAAAATCTAAAGACAGTGTATCAGTGAAGAGGAGTGTGTAGGGGTAGGCATACACAACAGAACTTCTCTTTAACTGGCGTTTTCCTCGCTGCCTAGTTTAGACAGTGATGTCTGTGTAGGCCGGCTCTGGTGTCTAACGATACATACGCTACGCTAGACCTCGGGCACGCACGATAACGCTCGAGTGCGTGTGCTGTGAGGGTTCGTGAGGCAGGTTCAAAGTGGCTTGTCATGATTATTGTTTTCCATACAAACGAATCAGAGCGTAGTCGGCAGGAGTGCGAGACGGTGTCCCTCTCCCGGACCGGCAGCGAGTGGAATTGTGTTACACGTGTGGGAGGGGCAGCTCGGGCACCTGTAGGCCTCTGTTCAATGCTGCCCTTCGAGccatccccaccccccaagTAAAAATTAGAAACAgatataataaaattataataaaatgttttctttagcaCCATTGTTGAgtaacacactctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaataacatgaaaacaaaaagcaaaaaaaaagcaaggttagcagacagtacagtacaatggaTGCTTGAGGCAGTGTTGTACCGTCAGTGTCAGGTCCACTTTATCTGAATCCTGGGAGTTGTATTCTTAAGAGCGTTCTCCCACGCTGACGCCCTACTCATTACAGTCCTTATTGGTCGcaggttgtgttttgtttgtaaacgGGTCCAGTAAGGCGCTCACTTTAAGGTCAGGTCAAGCGTGTAAACCACTGTGCAGCTCTGGGACGGGGAGGGTGCCACAGTATCTCCTGGCTTCTCACGTCTTTGCTTTATCTGAATTGGAGTAATGCACATTTTTACAGATATACATGGCCTGTATCTAGacttagtgtttttttgtgtgtgtattggaccttaaaaagacattaaatgagtcaaaaattaatcaattaatttaaacttaaatgcTTAATTGGCCAGTAACAGCCAGTGCCCCCTGGATACCTGAAGTCTAACCCCCTTGCCCGAGAGTATTTCGGTTATCGGTGACGGCAGGCAATCAAGCACCAAAAAggtttagtttgtttctgttttgctgaTAATAAAGTCTTAGTTTGATACACAGGTTTGTGTACCGGTGGGAGATACTCTGAGAAGAGCTTTATGTTAATGTAATACAAACAGTCACGCCAAAAAACATGGGAACACAAGCTTCTGCTGCCGCGTGACGTTTGCTCTTTCTGTCTTGTGAAAGTAAAATCAACATAGATCTAATGTAGTTGACTATAGCTTTCCACCCAAAATATTTTTGGAGAAGCCCTGAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61502 True 2379 lncRNA 0.43 1 1321891 1324269

Neighbor

gene id symbol gene type direction distance location
AMCG00008443 NA coding downstream 117240 1201183 ~ 1204651 (-)
AMCG00008442 NA coding downstream 122466 1193572 ~ 1199425 (-)
AMCG00008438 LOC107378341 coding downstream 207737 1096316 ~ 1114154 (-)
AMCG00008440 NA coding downstream 227358 1094213 ~ 1094533 (-)
AMCG00008439 NA coding downstream 228051 1093532 ~ 1093840 (-)
AMCG00008453 pin1 coding upstream 297195 1621464 ~ 1624721 (-)
AMCG00008456 NA coding upstream 356558 1680827 ~ 1693036 (-)
AMCG00008457 NA coding upstream 417165 1741434 ~ 1765078 (-)
AMCG00008464 NA coding upstream 472297 1796566 ~ 1803085 (-)
AMCG00008465 NA coding upstream 480660 1804929 ~ 1808516 (-)
G49210 NA non-coding downstream 912 1320763 ~ 1320979 (-)
G49209 NA non-coding downstream 2020 1319610 ~ 1319871 (-)
G49156 NA non-coding downstream 241935 1038505 ~ 1079956 (-)
G49131 NA non-coding downstream 353297 967197 ~ 968594 (-)
G49129 NA non-coding downstream 357235 964047 ~ 964656 (-)
G49232 NA non-coding upstream 302018 1626287 ~ 1628365 (-)
G49346 NA non-coding upstream 414011 1738280 ~ 1739329 (-)
G49389 NA non-coding upstream 730246 2054515 ~ 2066295 (-)
G49393 NA non-coding upstream 743814 2068083 ~ 2075648 (-)
G49394 NA non-coding upstream 745521 2069790 ~ 2070872 (-)
AMCG00008428 NA other downstream 381219 928937 ~ 940672 (-)
G49054 NA other downstream 473845 841883 ~ 848046 (-)
G48989 NA other downstream 594831 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 663421 653379 ~ 658470 (-)
G48905 NA other downstream 703395 615457 ~ 618496 (-)
AMCG00008452 NA other upstream 305585 1629854 ~ 1655479 (-)
AMCG00008462 NA other upstream 474576 1798845 ~ 1859491 (-)
AMCG00008466 NA other upstream 495505 1819774 ~ 1840099 (-)
G49375 NA other upstream 555352 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 749514 2073783 ~ 2085025 (-)

Expression


Co-expression Network