G49221


Basic Information

Item Value
gene id G49221
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1506713 ~ 1506935 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61514
tttttacatttcaaatctaAATAGAGTGCTATTATTTATaaactgaaggggaaaaaaaataatattaaaaactaaaaactactACAAGAACAGCGtccagaaataaagaaaaagacaaagaactttcttctttcttttctgtttttttttcttttctttttgtggtCAGTGCGCATGGTTCTTTTTtgtgacaagaaaataaatatctaccTTTGTCATTTAA

Function

NR:

description
Transposable element Tc3 transposase

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61514 True 223 lncRNA 0.26 1 1506713 1506935

Neighbor

gene id symbol gene type direction distance location
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding upstream 139 1497221 ~ 1506574 (+)
AMCG00008448 NA coding upstream 20310 1485010 ~ 1486403 (+)
AMCG00008449 NA coding upstream 32730 1472688 ~ 1473983 (+)
AMCG00008447 NA coding upstream 62255 1444177 ~ 1444458 (+)
AMCG00008444 col5a3,LOC106593482 coding upstream 183966 1315607 ~ 1322747 (+)
AMCG00008455 NA coding downstream 204182 1711117 ~ 1716867 (+)
AMCG00008454 NA coding downstream 211237 1718172 ~ 1737515 (+)
AMCG00008459 NA coding downstream 287876 1794811 ~ 1795802 (+)
AMCG00008461 NA coding downstream 289409 1796344 ~ 1801758 (+)
AMCG00008458 NA coding downstream 367102 1874037 ~ 1880962 (+)
G49178 NA non-coding upstream 344023 1162483 ~ 1162690 (+)
G49097 NA non-coding upstream 388933 1080021 ~ 1117780 (+)
G49101 NA non-coding upstream 399423 1058561 ~ 1107290 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding upstream 410079 1092721 ~ 1096634 (+)
G49107 NA non-coding upstream 419555 1086570 ~ 1087158 (+)
G49233 NA non-coding downstream 123005 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 135495 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 292926 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 296890 1803825 ~ 1806027 (+)
G49270 NA non-coding downstream 308649 1815584 ~ 1848738 (+)
G49208 NA other upstream 182444 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 538130 965838 ~ 968583 (+)
G49013 NA other upstream 627200 876554 ~ 879513 (+)
G48846 NA other upstream 918267 587280 ~ 588446 (+)
G48811 NA other upstream 954807 473745 ~ 551906 (+)
AMCG00008451 ubl5 other downstream 118359 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 423719 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 555621 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 581545 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 620780 2127715 ~ 2143394 (+)

Expression


Co-expression Network