G49232


Basic Information

Item Value
gene id G49232
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1626287 ~ 1628365 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61527
CTGGTTTACAACAGACAAAGAGCAACCAGACGGATGTATATAAATActgaattttatttcaaaacaatatcaaaacaaaataggcaatgcaagaggggaaaaaatatatagtcacTGCTTTCCATGATACCAAAGCAAATTAACAACGATGACAAAACCTCTTCCTAGTTCGATACGAGCGGGGCATGTGTGTCAGAAGAGACGGCATTTCTCCTCGTGCGTACGGGGCAATCAGAACAGCCCAGGCCTCGTCTCTACTGGTAATACAGCTCCAAGTTCATGCCGTCGTGGATTTCATCTGGTCAAGGGGTTAAGGAAGAGAACCAGGTCCCCAGTGGGCAGATTTCCTGTTAGGAAAGGAAGAGACAGACCCGCCACCTAGCAGGTCAGCACACCTGCAAGAGCACTTTTCTACAGCCCCTCGCTCGCAGTCACCTGCTCCGATTTCAGAGGCCCTCGTGCGCAGGAATATCCCACAGCAGGACCACTGGTGGACGGAGTCTGTGAAACCGAGCGACGGCAGCTTTGCTTTTCCCCTCGTCACCTTACCAAAACAAGGATAATCCAGTCAGACGGGAAGAGGATTCTGCATGGAAGgcagtatttaaatgttaaactctACAAATGCAGCAGGTAAATTAACTAAAGTAACCAAAGTATACTTCATTAGAGTATATGGCCCCCGTGGAAACAaccctttataaaacagctgtgtgcgCCTCAGAATCTGGATGCGGCCTCTTCAGCTGAAAAGGTACGTTAAGCTCGAACAGGAggaacccccccgccccccgctcAATTTAATGGGAAGCAGCTGCTGTacagacagaaaacaagctTCACAAAGGATACAGTCCCCCAAAGACACGTGGTCCTTGAATATCGTGTACCTGCAACGAAAAGAGGGAATCTTAACTAGAttttacagatgtgttttgCAGGGCTGGACTGGGGTCGAAGGTTGTGTTCTGGATGACCTCTTTAAcccaaaacagacatttaaacattttttgttgatGGAAATCTTTGATACAACCTCCTGTAGTGGTTCTAGATTATATCACATCTAGACTAATTAAGCCACTTAAGTGGATCGAATGAGTCACTGAGTGCTTGGTTGGCGTGAACACCCAGAAAATGCTGAAACTCTCCGGGACCAAGACTGGAGACCCTCCCCCATCAGACTCACCATTTCTTTAAGACGATCTTGTCCCACCTGGTTCCAGTCTGAGCCGCTATCAACTTCTTCAAGTCACCAATTGTGTCGATACTTGCACTTCACCCTGACTTTCTTGCCCAGACGGTCGTTGCACACTACTTCAATCATGGCGAGATAGGGCACCTGAAAGAGAAGACAGATGGACAGTGAGAAAAAGGACTCAATGATCCCCTCTTGAGCAGGACAGACAGTCAGTCAAGTTGCCAACACAAGCAATGGCCCCACCCATGTCTTATACAAGACAACGATTGAATCAGCTTTGGTATTTGATATCTGTGCTTTAGTCCAGTGGtcctcaaccctggtcctggaggtcCCCCCACCCTGCTGCGATTTCTTCCAGCCGAGCTCTTAGTTACTTAATTGaccccttaatttaactaataatttcataaataagattgttttcatatttatttattttaaacagcaggggTTTCAAGTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61527 True 1667 lncRNA 0.46 2 1626287 1628365

Neighbor

gene id symbol gene type direction distance location
AMCG00008453 pin1 coding downstream 1566 1621464 ~ 1624721 (-)
AMCG00008443 NA coding downstream 421636 1201183 ~ 1204651 (-)
AMCG00008442 NA coding downstream 426862 1193572 ~ 1199425 (-)
AMCG00008438 LOC107378341 coding downstream 512133 1096316 ~ 1114154 (-)
AMCG00008440 NA coding downstream 531754 1094213 ~ 1094533 (-)
AMCG00008456 NA coding upstream 52462 1680827 ~ 1693036 (-)
AMCG00008457 NA coding upstream 113069 1741434 ~ 1765078 (-)
AMCG00008464 NA coding upstream 168201 1796566 ~ 1803085 (-)
AMCG00008465 NA coding upstream 176564 1804929 ~ 1808516 (-)
AMCG00008467 NA coding upstream 181506 1809871 ~ 1811694 (-)
G49211 NA non-coding downstream 302018 1321891 ~ 1324269 (-)
G49210 NA non-coding downstream 305308 1320763 ~ 1320979 (-)
G49209 NA non-coding downstream 306416 1319610 ~ 1319871 (-)
G49156 NA non-coding downstream 546331 1038505 ~ 1079956 (-)
G49131 NA non-coding downstream 657693 967197 ~ 968594 (-)
G49346 NA non-coding upstream 109915 1738280 ~ 1739329 (-)
G49389 NA non-coding upstream 426150 2054515 ~ 2066295 (-)
G49393 NA non-coding upstream 439718 2068083 ~ 2075648 (-)
G49394 NA non-coding upstream 441425 2069790 ~ 2070872 (-)
G49414 NA non-coding upstream 608162 2236527 ~ 2236861 (-)
AMCG00008428 NA other downstream 685615 928937 ~ 940672 (-)
G49054 NA other downstream 778241 841883 ~ 848046 (-)
G48989 NA other downstream 899227 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 967817 653379 ~ 658470 (-)
G48905 NA other downstream 1007791 615457 ~ 618496 (-)
AMCG00008452 NA other upstream 1489 1629854 ~ 1655479 (-)
AMCG00008462 NA other upstream 170480 1798845 ~ 1859491 (-)
AMCG00008466 NA other upstream 191409 1819774 ~ 1840099 (-)
G49375 NA other upstream 251256 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 445418 2073783 ~ 2085025 (-)

Expression


Co-expression Network