G49233


Basic Information

Item Value
gene id G49233
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1629940 ~ 1631543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61528
TCACCTTTTCAGAATGTCAGATAGCACACAGGAACCAgcacaaaacaaccaaaactaaaaactgtCTCCAGTGCCAGGGAAATACCAGTTGTAAAGAAATCTTACTGTTTAAGACAATCACAATTATcgaacatttttaatatatgaacaAATGCAGGCCCTACAATAACAGGTcctaatattttaatgtatccaAAACCCTATATTATCCCACCATCACAGTcctatgaataaatatataattaaatgaatgtgccATTGACTGATAAGGAAGTTACATTCagtgcatgtatatatagatagatacacacacacacatacatatatatgtgtgtgtatatacatatatacctCTATATTTGCAGACTTGTCCTATCTAAGGGTGCAGCAGAGTGAGATTCTTCCGTGCAACATGGATGATAAGACACATCAGGTCAGAAGAGAGGATATCAATGGTTATCAATAGATTTCCCATGCTTTCAATTGCACtgttatgtaaattggaatttgtcatgttttatgccttgaactgcactatTTTTGCCCtgtataagggtgtctgctaagaaataaataataattataataattatctgctgctgcttttcctGACGGGGCAGAAATCTGCGAGTTCCTGGATTCTTACGAAGGCTGGTCATGGGGTGCGCTCTTCCTGTAAGTCATGGTTAAAACTGGAAATAGCTGAGGGAAGCAAACCGCCGTGCAGTCGGTCACCATTTGGGAAATGACAAAAAGGAGAAGAGAAATAGGTGtcgacacagacacacaaaccacaGGCCGAGAATAGCCTACTGCACTAATGCTACTATGTTAAATGCCAGTGTAACTCCAAACGTGCACCATCAGAATCCGTCTCTCTCATTCATTCACTCaatcacactctccctctctcgaaAAAACAATCAGCCAGGCCATCTCCACCCCCCACAGAGTCAGTGATGAAAACCGTTAGTTGTAAAAGCAGGTGGGTCCCCTGGGAAATAATCTGGTGCTTCGGGGTGTTACTcatttttaatgtggtTCTATTTTGTGGAGCAGAGACCCCAGCCCCAGAGTCAATTGgcaaataaacaggaagtgaacGCTTTGGTGCTAaagctgacagacagacagactgtatGAGAGCCAGTCTGCGCACAGAATACAGAGAGACAAACATCTGACCAACAagacacaaaatcaaaaaagtCAAGAATCggaaaaaatactaaaaagtcCTTCACAGGGGAATGATGCGAGAATGTTCTTGAATAAATAAGAAAGCACGATGAAAGAGAAGGTTGTGGccttcagtcagtcagtgtgtgtgtgtatgtgtgtttctgtatcaCACTACTGGGCTTTGTGGGGCTCGTAGGTGGCAGTCTCTGGCTCAAGCTAGATCGGACAGGTCTGGGGTCCCCTCTTCACCCGTCACTGTCCCCCTTGGATGGGCACTCTCTTCCGTGGCGTTTCTCAGGATGCTCAGGAATCGTAGGGGACGTCCGACCGTCAGCAGTAGTCAGAGTAGTCCTCCTCGACGTAGTTGGACGGGAACAAGCCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61528 True 1567 lncRNA 0.43 2 1629940 1631543

Neighbor

gene id symbol gene type direction distance location
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding upstream 123366 1497221 ~ 1506574 (+)
AMCG00008448 NA coding upstream 143537 1485010 ~ 1486403 (+)
AMCG00008449 NA coding upstream 155957 1472688 ~ 1473983 (+)
AMCG00008447 NA coding upstream 185482 1444177 ~ 1444458 (+)
AMCG00008444 col5a3,LOC106593482 coding upstream 307193 1315607 ~ 1322747 (+)
AMCG00008455 NA coding downstream 79574 1711117 ~ 1716867 (+)
AMCG00008454 NA coding downstream 86629 1718172 ~ 1737515 (+)
AMCG00008459 NA coding downstream 163268 1794811 ~ 1795802 (+)
AMCG00008461 NA coding downstream 164801 1796344 ~ 1801758 (+)
AMCG00008458 NA coding downstream 242494 1874037 ~ 1880962 (+)
G49221 NA non-coding upstream 123005 1506713 ~ 1506935 (+)
G49178 NA non-coding upstream 467250 1162483 ~ 1162690 (+)
G49097 NA non-coding upstream 512160 1080021 ~ 1117780 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding upstream 533306 1092721 ~ 1096634 (+)
G49107 NA non-coding upstream 542782 1086570 ~ 1087158 (+)
G49236 NA non-coding downstream 10887 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 168318 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 172282 1803825 ~ 1806027 (+)
G49270 NA non-coding downstream 184041 1815584 ~ 1848738 (+)
G49271 NA non-coding downstream 206643 1838186 ~ 1839004 (+)
AMCG00008451 ubl5 other upstream 1607 1625294 ~ 1628333 (+)
G49208 NA other upstream 305671 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 661357 965838 ~ 968583 (+)
G49013 NA other upstream 750427 876554 ~ 879513 (+)
G48846 NA other upstream 1041494 587280 ~ 588446 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 299111 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 431013 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 456937 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 496172 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 577940 2209483 ~ 2211514 (+)

Expression


Co-expression Network