G49346


Basic Information

Item Value
gene id G49346
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1738280 ~ 1739329 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61681
NNNNGAGGATGTTTGCATGAAAATAACCACCCTTACGGATTTTgataattttctgtaatttctATACTTGAATACTTAATTTGAAGTTCTCGTTTTCATCTGCTACTCGTCAGCCCACGGTGCCCTCTCAGACCCAGAGATTTAGGGTGTGAAGCTCGCCATTGCGCGATTTCCAGTAGGTCCAAAGTACAGTTTGGTGCAGAAAGAAACAATTGTTTCATGTTCCTGGTAAGTGCACTGTGAAGGGTTGAAGCCTTAataataaaccacacacacacacacacacacgcacgcgtCTCTTTTTGACAGCAGGAGTCAAAACAGCATTGCCTATAATGGCCAGTGCTGGACTGGTCAagattttattactttttgtttagtttgtttcaaCTATTATTATGATAAGCACACAATAAAAGAACTCTGATTTACTCCTCTTATTTGTCTCTGAAAAGGGGTGGGTGAGGAACACAAAAGCAATGGAAGGTGAGCGAAAAAGATGCTTTGCAATCTTTTAGGAcgatcatatttatattataagaaataatatattttagctATGTTACCACTATatttaaggaGGACTTATTCTCTTTtcaggtttctgtttttttgtttttttttggctccCGGTCTGTGgactgaatgttttattttctttgatttaattatgcTGTTGCTGAGCCTGTTCTCTGGAGATGCTCTGTCTGTGCAGGATCACACTTCTCTTCTCTTGGTGCCTTTTGATTTCCCCCTCTCGTCTATAGTGTGTTGTACAtagtttgaaatgaaaacagattgCCTATTACAATTTCCCTTATTTTAATGGGATATAAATgagtacatttcaaaaataaccCACTATCTGACTTGgtctcatttgttttaataagatatgcatatttatataaacagattTTCTGGTAACTTTCTTCAattgtctttttcatttccagttttgtgtgtgtaagggTTCCAGGTGTTACTG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU61681 True 988 lncRNA 0.37 2 1738280 1739329

Neighbor

gene id symbol gene type direction distance location
AMCG00008456 NA coding downstream 45244 1680827 ~ 1693036 (-)
AMCG00008453 pin1 coding downstream 113559 1621464 ~ 1624721 (-)
AMCG00008443 NA coding downstream 533629 1201183 ~ 1204651 (-)
AMCG00008442 NA coding downstream 538855 1193572 ~ 1199425 (-)
AMCG00008438 LOC107378341 coding downstream 624126 1096316 ~ 1114154 (-)
AMCG00008457 NA coding upstream 2105 1741434 ~ 1765078 (-)
AMCG00008464 NA coding upstream 57237 1796566 ~ 1803085 (-)
AMCG00008465 NA coding upstream 65600 1804929 ~ 1808516 (-)
AMCG00008467 NA coding upstream 70542 1809871 ~ 1811694 (-)
AMCG00008463 NA coding upstream 123285 1862614 ~ 1870208 (-)
G49232 NA non-coding downstream 109915 1626287 ~ 1628365 (-)
G49211 NA non-coding downstream 414011 1321891 ~ 1324269 (-)
G49210 NA non-coding downstream 417301 1320763 ~ 1320979 (-)
G49209 NA non-coding downstream 418409 1319610 ~ 1319871 (-)
G49156 NA non-coding downstream 658324 1038505 ~ 1079956 (-)
G49389 NA non-coding upstream 315186 2054515 ~ 2066295 (-)
G49393 NA non-coding upstream 328754 2068083 ~ 2075648 (-)
G49394 NA non-coding upstream 330461 2069790 ~ 2070872 (-)
G49414 NA non-coding upstream 497198 2236527 ~ 2236861 (-)
G49419 NA non-coding upstream 620531 2359860 ~ 2360112 (-)
AMCG00008452 NA other downstream 82801 1629854 ~ 1655479 (-)
AMCG00008428 NA other downstream 797608 928937 ~ 940672 (-)
G49054 NA other downstream 890234 841883 ~ 848046 (-)
G48989 NA other downstream 1011220 724880 ~ 727060 (-)
AMCG00008407 NA other downstream 1079810 653379 ~ 658470 (-)
AMCG00008462 NA other upstream 59516 1798845 ~ 1859491 (-)
AMCG00008466 NA other upstream 80445 1819774 ~ 1840099 (-)
G49375 NA other upstream 140292 1879621 ~ 1880962 (-)
AMCG00008474 NA other upstream 334454 2073783 ~ 2085025 (-)
AMCG00008491 prkcsh,LOC102779661 other upstream 897586 2636915 ~ 2702422 (-)

Expression


Co-expression Network