G49582


Basic Information

Item Value
gene id G49582
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2885831 ~ 2886138 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62010
cgcatttaaaaaaagttatagattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagctctctcttaaagggagtgctcctaatcttagctcgttacctgtataaaagacacctgtccacagaggcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagactgtagacctacacaaggctggaatgggctacaagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62010 True 308 lncRNA 0.43 1 2885831 2886138

Neighbor

gene id symbol gene type direction distance location
AMCG00008497 NA coding upstream 62735 2815396 ~ 2823096 (+)
AMCG00008498 keap1 coding upstream 74532 2798540 ~ 2811299 (+)
AMCG00008499 NA coding upstream 91951 2787868 ~ 2793880 (+)
AMCG00008493 NA coding upstream 165170 2715820 ~ 2720661 (+)
AMCG00008489 elavl3,LOC102780136 coding upstream 255632 2616463 ~ 2630199 (+)
AMCG00008505 NA coding downstream 18421 2904559 ~ 2906941 (+)
AMCG00008509 NA coding downstream 108803 2994941 ~ 3003560 (+)
AMCG00008510 prdx2 coding downstream 130318 3016456 ~ 3019921 (+)
AMCG00008514 NA coding downstream 134457 3020595 ~ 3021066 (+)
AMCG00008516 LOC106601330 coding downstream 201042 3087180 ~ 3102783 (+)
G49541 NA non-coding upstream 72938 2812174 ~ 2812893 (+)
G49431 NA non-coding upstream 421164 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 672338 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 677354 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 975412 1908823 ~ 1910419 (+)
G49598 NA non-coding downstream 23524 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 24556 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 141840 3027978 ~ 3042595 (+)
G49738 NA non-coding downstream 470561 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 528043 3414181 ~ 3443897 (+)
G49523 NA other upstream 115787 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 674317 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 742437 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 778039 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 810182 2062556 ~ 2075649 (+)
G49583 smarca4,LOC102779508 other downstream 628 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 543759 3429897 ~ 3885604 (+)
G49980 NA other downstream 1269950 4156088 ~ 4160062 (+)
G49982 NA other downstream 1275920 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1675853 4561991 ~ 4572874 (+)

Expression


Co-expression Network