G49598


Basic Information

Item Value
gene id G49598
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2909662 ~ 2910628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62038
CGCTCCGATCTTCGCGAAGCCAGCTGATCCCAGAGGTGCTCCACACACAGGATGCGTTTGCCATACTGTGCAGCAGGGGGAGAGGGTGCAGTCTGTGAGATGAATTCTCTAGCTTCATCCTCAGCCCAGACTGGCAGCGGAGGGGCGGGGCATCTCACAAAAGCGATGTTAATTAGTGTTAAAAGCAGTGGAAGCACCTAGTGAAGTGAAactaataaaatcaataataataataataataataataaataaataaataaaactgacctCCTAGGTTCAAACTCAATGGATAAAAATTCTCCCACTCTGACATACTCTATTTCGTCAAGAGCAGCTTTGGTGTCTTGGCTCTAATCTAatcccaaccccccccaccccgagtAATGGACTGTCctggcaaaaaataaatcaaatccatcTTCTCTGCTCGAGGCTTTCACCCGGACTGAGCAACTATGGGCAACCGTCAGGGGACAGGGTGGCAGCGGGGGGTCTGACCCATGACATCGGAACATAagttaacattaataataataatattattattattattattattattaataataataatagggcaGAGACGGGCAAGAGCGACTCTTCCATTGCATTCTATTCAATATCAAGTCTTGGCTACAAATCCTTTATTCCATTCGTCTCCAGGAGCAAAggccaattaagcaattaagatctgTAGTGGGGCAGACAAGAAGAGCCAAAAGTGCCTGCTCCTGTAATAGAGCCGACAGCCTGAGGGAGTGCAGTGCCGGAGGGTGGGGGGACTCTAGGGGCTCCAGTGTTCTGCTGTAGTGAGGCATGGGTGGGGGCGCCGTCACAGGAAGACGAAGTCGTCCGTGCTGCTCCTCTTGTTGCGCGGCAGCTGGGCCGGGGGCAGGATGTGGGGGCTGTGCTCTGGGGGGGTGGCGCTCCACTCGTCCAGCCCGTAGTCCTGCCCCCGGCCCTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62038 True 967 lncRNA 0.50 1 2909662 2910628

Neighbor

gene id symbol gene type direction distance location
AMCG00008505 NA coding upstream 2721 2904559 ~ 2906941 (+)
AMCG00008497 NA coding upstream 86566 2815396 ~ 2823096 (+)
AMCG00008498 keap1 coding upstream 98363 2798540 ~ 2811299 (+)
AMCG00008499 NA coding upstream 115782 2787868 ~ 2793880 (+)
AMCG00008493 NA coding upstream 189001 2715820 ~ 2720661 (+)
AMCG00008509 NA coding downstream 84313 2994941 ~ 3003560 (+)
AMCG00008510 prdx2 coding downstream 105828 3016456 ~ 3019921 (+)
AMCG00008514 NA coding downstream 109967 3020595 ~ 3021066 (+)
AMCG00008516 LOC106601330 coding downstream 176552 3087180 ~ 3102783 (+)
AMCG00008515 NA coding downstream 208481 3119109 ~ 3124136 (+)
G49582 NA non-coding upstream 23524 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 96769 2812174 ~ 2812893 (+)
G49431 NA non-coding upstream 444995 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 696169 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 701185 2163319 ~ 2208477 (+)
G49599 NA non-coding downstream 66 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 117350 3027978 ~ 3042595 (+)
G49738 NA non-coding downstream 446071 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 503553 3414181 ~ 3443897 (+)
G49753 NA non-coding downstream 533374 3444002 ~ 3445127 (+)
G49583 smarca4,LOC102779508 other upstream 20766 2886766 ~ 2888896 (+)
G49523 NA other upstream 139618 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 698148 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 766268 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 801870 2088480 ~ 2107792 (+)
AMCG00008526 NA other downstream 519269 3429897 ~ 3885604 (+)
G49980 NA other downstream 1245460 4156088 ~ 4160062 (+)
G49982 NA other downstream 1251430 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1651363 4561991 ~ 4572874 (+)
G50215 NA other downstream 2685395 5596023 ~ 5596799 (+)

Expression


Co-expression Network